Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01376 atggctgctgagaagatgcctgattccaccaaaccagggatgactagAAGCACCTCTTATCTAGACTCCATTTATGGCAAAGGTTCCCTTGAGCTGGTATGGGAAAATGGTCAACTTCACGTGCAGCAAGGAGGTTCATCATCAACATCAAGTGTCGTCACACGAATGACTCCCTCGTGCGAAGGTTCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCACTATACTCCCTCATGGACTTCCCAGTTCAAAGGGACTCTGCCTTGGACAATTCTCAACCAAATTCTCATCAAAGCAATGACCAAAATTCTGGTAAGTTTGCAAAGGCTGCTAATTCTAGCAGCAAAGGTCTTGATCGTTCCTTAGTGATAAACTCACCTAAAGGATCACCGGGAAGACAAAAGAACCCTTTAAATTCTGATACATCAAACATGGTTCCAAGAAGTGAGGAAACAACACCTCCTGATGAGCAATCTGAAGCTGTTGGTCATGATAGTATTCATGGATCTCGTGGTCAATATTTTAACCAAACCTCAAGCTCAGCAAGACATAGAGCAAAGGGAAAAGCTAATGATACTAAACAAAAATACTGTGATGAAGGCTTGTTGGAATCTTCTTCCCTATGCTCCATTGGAGCCTCAAATAACAGAAACGTGTGTAGCAGGACACATGATGATATCGATGACTCAACGTATTTAAGCAATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTTGGGAAGGCACCGGTGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATATTGAAGGAGCTCATACCAAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATGATGTCAATGGGTGCTGGATTTTGTATGCCGTTCATGATGCTACCTAATGCTGCTCATCATATGATGAACACACCCCATTTACATCAGTTAATGGGACTTGGTATGGGGTTCAGGCCAGGCACAGCCATGCCTTGTAGCCTCCCTCAGTTCCCTATTACACCTTTGCATGGTATCACTGACAACAGAGTTCACATGTTTGGTTTCCCTAACCAAGTTCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCTACACAACCCACCCCTCTTGCAACTAGCACAAACATCAACCTGGCGGAAAACCCTGCTTCTTCCCAGTTAACTACTCTAATGGCCTCGTCCCCCAAGAACTTGTTTATTAGTGGACAAGCTGAATATGCAACAAAGCAATAA 1350 0.4126 MAAEKMPDSTKPGMTRSTSYLDSIYGKGSLELVWENGQLHVQQGGSSSTSSVVTRMTPSCEGSFNAKSARLSSLYSLMDFPVQRDSALDNSQPNSHQSNDQNSGKFAKAANSSSKGLDRSLVINSPKGSPGRQKNPLNSDTSNMVPRSEETTPPDEQSEAVGHDSIHGSRGQYFNQTSSSARHRAKGKANDTKQKYCDEGLLESSSLCSIGASNNRNVCSRTHDDIDDSTYLSNNDEEPEDVVKEKPAWEGTGVKRSRNAEVHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQMMSMGAGFCMPFMMLPNAAHHMMNTPHLHQLMGLGMGFRPGTAMPCSLPQFPITPLHGITDNRVHMFGFPNQVPPMPISHAPFIPMLGNPSTQPTPLATSTNINLAENPASSQLTTLMASSPKNLFISGQAEYATKQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01376 449 Pfam Helix-loop-helix DNA-binding domain 262 307 IPR011598 GO:0046983
Gma10g01376 449 MobiDBLite consensus disorder prediction 169 183 - -
Gma10g01376 449 MobiDBLite consensus disorder prediction 85 151 - -
Gma10g01376 449 MobiDBLite consensus disorder prediction 1 20 - -
Gma10g01376 449 CDD bHLH_AtPIF_like 258 320 - -
Gma10g01376 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 319 IPR036638 GO:0046983
Gma10g01376 449 MobiDBLite consensus disorder prediction 41 63 - -
Gma10g01376 449 PANTHER TRANSCRIPTION FACTOR PIF3 1 448 IPR044273 GO:0003700|GO:0006355
Gma10g01376 449 Gene3D - 254 316 IPR036638 GO:0046983
Gma10g01376 449 SMART finulus 264 313 IPR011598 GO:0046983
Gma10g01376 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Gma10g01376 449 MobiDBLite consensus disorder prediction 85 192 - -
Gma10g01376 449 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01376 Gma-Chr10 40581017 40583491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01376 140 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 40.840 1.42e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g01376 HLH 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01376 K12126 - gmx:100818543 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02109 19 49959542 49961906 Gma10g01376 10 40581017 40583491 PCT
Gma03g02072 03 46273314 46276188 Gma10g01376 10 40581017 40583491 PCT
Gma10g01376 10 40581017 40583491 Gma19g02109 19 49959542 49961906 PCT
Gma10g01376 10 40581017 40583491 Gma03g02072 03 46273314 46276188 PCT