Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01374 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCCTCTATCTCCAGCTGCAGAAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACATAGTCAAGACCACCTTCGCACAGATCTTAGGCTTGGACTAAGCCTTTCCGCTACTCAACATGTTGGCTCTTCTAGTTCAGGGGGACACTGGCAACCGATGCAGCCACATCTAATAAGTAGTTTTTCACAAGCTACTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGTAGAAAACTCAACTTGTTAGCTCATGATGGTTATCACGAGTTAGTAAAGACTCTTGAACAGATGTTTGACACTACCATTCTGTGGGGGACTGAAATGGATGGAGTGCAACCAGAGAGATGTCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACAAGGGTGGAGGCATTCGGGTGA 534 0.4532 MGKASSSSSSSISSCRNPSNSTASSLTHQHSQDHLRTDLRLGLSLSATQHVGSSSSGGHWQPMQPHLISSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVEAFG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01374 177 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gma10g01374 177 Gene3D - 79 176 - -
Gma10g01374 177 PANTHER AUXIN-INDUCED PROTEIN 2 177 - -
Gma10g01374 177 MobiDBLite consensus disorder prediction 1 30 - -
Gma10g01374 177 SUPERFAMILY CAD & PB1 domains 81 171 - -
Gma10g01374 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 177 IPR003311 GO:0005634|GO:0006355
Gma10g01374 177 MobiDBLite consensus disorder prediction 1 31 - -
Gma10g01374 177 Pfam AUX/IAA family 76 172 IPR033389 -
Gma10g01374 177 ProSiteProfiles PB1 domain profile. 85 175 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01374 Gma-Chr10 40547483 40548893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01374 89 170 B3 DNA Binding Superfamily AT4G23980 40.244 3.75e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma10g01374 AUX_IAA 1.9e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01374 K14484 - gmx:100781660 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01374 10 40547483 40548893 Gma02g00066 02 782150 783180 GST
Gma19g02108 19 49945528 49946436 Gma10g01374 10 40547483 40548893 PCT
Gma03g02071 03 46261199 46263109 Gma10g01374 10 40547483 40548893 PCT
Gma10g01374 10 40547483 40548893 Gma19g02108 19 49945528 49946436 PCT
Gma10g01374 10 40547483 40548893 Gma03g02071 03 46261199 46263109 PCT