Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01362 ATGCACCATCAGGTGGCTGAAACAACACATTTGCTATGGAACAATGAGCACATTCTGAATCTGATAACGCAAAACAGACAGAAGATTGTTACTGCTAAATGGAAGACTGCTACAGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGGGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACGTGAAACTGACTCAATGAGGTTCTTGGAAGATGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGACAGAAAAAGATGGAAAAAAGAACAAGTTACATATACCTCCCTTTGGACCATTCTTCTTTCTTGTGTGGTTATTGATGTGTTTTATACATGTTCACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTGTTGTTCACTAATGATAGGCGAGCAGCTTTTGCTGCCGAGAACAATAATTTGTTGGAGGTTGCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCATATGAAGAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGATCATATGAAACTTCAAAAACAACAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAACATAGAAGACCTGCTGATCTTTTGGTATGTTTAGATGTTGAGATGAGAAGTACAAGCTATTGCATACCTGTTATTACTTAA 819 0.3822 MHHQVAETTHLLWNNEHILNLITQNRQKIVTAKWKTATAEEKKPYEGIYHAGKEAYLQVIAKEKRETDSMRFLEDEQKQRTAMELLEQYMQFKQETEKDGKKNKLHIPPFGPFFFLVWLLMCFIHVHKKEKDPLKPKHPMSAYLLFTNDRRAAFAAENNNLLEVAKITSEEWKNMTEEQKRPYEEKKDEEAGHFMKEEEDHMKLQKQQALQLLKKKEKTENIIKIIVLEDTKEYISYVSKEEAKTQHRRPADLLVCLDVEMRSTSYCIPVIT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01362 272 Gene3D High mobility group box domain 128 200 IPR036910 -
Gma10g01362 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 28 109 - -
Gma10g01362 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 127 262 - -
Gma10g01362 272 CDD HMGB-UBF_HMG-box 136 190 - -
Gma10g01362 272 Pfam HMG (high mobility group) box 136 199 IPR009071 -
Gma10g01362 272 Coils Coil 195 215 - -
Gma10g01362 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 28 109 IPR044601 GO:0003677
Gma10g01362 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 127 262 IPR044601 GO:0003677
Gma10g01362 272 SUPERFAMILY HMG-box 122 200 IPR036910 -
Gma10g01362 272 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 136 202 IPR009071 -
Gma10g01362 272 SMART hmgende2 135 203 IPR009071 -
Gma10g01362 272 SMART hmgende2 2 65 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01362 Gma-Chr10 40341568 40345585 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma10g01362 HMG_box 1.1e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01362 K09273 - gmx:100783033 252.292