Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01360 ATGGAAAAAAAAGCAACACTCGTCTCTGCTGTTTCTCTTATTCTCGTAGTGGGCGTTGCCCTAGGCGTTGTTGCTTATGTCTCCACCAACAACAGCGGAAGCGACAACAGTGAAAGCAACGACAGCGGTCAAGTTTCGACCCATACTAAAGCCGTGCAAGCCGTGTGCCAAAACTCCGACGACAAGAAGTTTTGCTCCGACACTTTAAGCTCCGTCAACACCTCGGACCCAACGGCTTACGTTAAAACCGTTTTGAAAAAAACGATGGACGGCGTCATCAAAGCCTTCAACCTCAGCGACACACTCACCGTCGAACACAGCAAGACCAACTCCTCCGTCAAGATGGCCCTGGAGGACTGCAAGGACTTGTTAGACTTCGCCATCGACGAATTGCAAGCCTCGCAAGTCCTAGTCAAAGACAACAACGTCAACAACATCAACGACGGCGTCTCCGACCTCAAAAACTGGATTGGCGCCGTTGTCGCGTACCAGCAATCGTGCCTTGACGGGTTCGACACCGACGCCGAGAAGGAGGTGCAGTCCAAGCTCCAAACCGGGGGCTTGGACTCTATGGGGAAGCTAACCGCGTTAGCGCTGGACGTTATTTCCAGCTTCGCAGAATTATTATCCGGTTTCAACTTGAACTTGACGACGTCGGTAAAACCACCGACGTCGTCATCTCGTCGTCTTCTTGACGTGGATCAGGATGGATATTCATCTTGGATATCCATGCCTGATCGCAAGCTCTTGGCGGATGCCAAGAAAGGCGATTCGGTTCCTCCCAATGCCGTTGTTGCCAAGGATGGGAGTGGCCAATATAAGACTGTTTTGGATGCTATTAACTCCTATCCCAAGAATCACAAAGGCAGGTATGTTATTTACGTCAAGGCTGGTGTCTACGACGAGTACATCACCGTTGACAAGAAGAAGCCCAATATTTTAATTTACGGTGATGGCCCCACCAAGACCATTATCACAGGTAGTAAAAACATGAAGGATGGCGTGAAGACAATGAGAACTGCTACCTTCGCGACGGTTGCAGAAGATTTCATAGCAAAGTCAATGGCATTTGAGAACACTGCTGGTGCAAGAGGGCACCAAGCAGTGGCGCTTCGCGTGCAAGGTGACCGTTCGGCCTTCTTCGACTGTGCCATACATGGTTACCAGGACACACTATACGCCCACGCTCATCGTCAGTTCTACCGTAACTGCGAAATCTCCGGCACAGTGGACTTCATTTTCGGCTACGGGACAACCTTGATCCAAAGCTCCAAACTCATAGTGAGGAAGCCTGACCCGAATCAACAGAACATAGTGGTGGCCGATGGCACGGACCAGAAGAACATGCCGACAGGAGTGGTGCTTCAGAACTGCGAGATCATACCGGAGGCGGCGCTGGTCCCCGACAAGATGAAGTTCAGATCATACTTGGCGAGGCCATGGAAGGCATATTCAAGGGCCATCTTGATGGAGAACACCATTGGTGATTTTATTCAGCCAGATGGGTTTCTTCCATGGAATGGCAACCTGTATCTTGACACGTGTTTCTTTGCCGAGTATGCCAACACCGGCATGGGTGCCGATACTCAACGTAGGGTTAAGTGGAGTCGTGGAGTCCTTAACAAGGCCGATGCCACCAAATACACTGCTGACCAATGGCTCCAAGCCAACACGTGGTTACCCGCCACCGGCATTCCTTTCGATCTTGGCCTCACTAAAGCTTGA 1725 0.5084 MEKKATLVSAVSLILVVGVALGVVAYVSTNNSGSDNSESNDSGQVSTHTKAVQAVCQNSDDKKFCSDTLSSVNTSDPTAYVKTVLKKTMDGVIKAFNLSDTLTVEHSKTNSSVKMALEDCKDLLDFAIDELQASQVLVKDNNVNNINDGVSDLKNWIGAVVAYQQSCLDGFDTDAEKEVQSKLQTGGLDSMGKLTALALDVISSFAELLSGFNLNLTTSVKPPTSSSRRLLDVDQDGYSSWISMPDRKLLADAKKGDSVPPNAVVAKDGSGQYKTVLDAINSYPKNHKGRYVIYVKAGVYDEYITVDKKKPNILIYGDGPTKTIITGSKNMKDGVKTMRTATFATVAEDFIAKSMAFENTAGARGHQAVALRVQGDRSAFFDCAIHGYQDTLYAHAHRQFYRNCEISGTVDFIFGYGTTLIQSSKLIVRKPDPNQQNIVVADGTDQKNMPTGVVLQNCEIIPEAALVPDKMKFRSYLARPWKAYSRAILMENTIGDFIQPDGFLPWNGNLYLDTCFFAEYANTGMGADTQRRVKWSRGVLNKADATKYTADQWLQANTWLPATGIPFDLGLTKA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01360 574 PANTHER PECTINESTERASE 3 572 - -
Gma10g01360 574 CDD PMEI-like_3 54 206 - -
Gma10g01360 574 Gene3D - 256 571 IPR012334 -
Gma10g01360 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 183 IPR006501 GO:0004857
Gma10g01360 574 SUPERFAMILY Pectin lyase-like 260 570 IPR011050 -
Gma10g01360 574 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Gma10g01360 574 SMART PMEI_2 47 201 IPR006501 GO:0004857
Gma10g01360 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Gma10g01360 574 Pfam Pectinesterase 262 556 IPR000070 GO:0030599|GO:0042545
Gma10g01360 574 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Gma10g01360 574 PANTHER PECTINESTERASE 3 572 - -
Gma10g01360 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01360 Gma-Chr10 40319190 40321641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01360 2 571 Carbohydrate Esterase AT3G05610 40.244 1.56e-145 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01360 K01051 - gmx:100820142 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01360 10 40319190 40321641 Gma10g01360 10 40319190 40321641 ECH
Gma10g01360 10 40319190 40321641 Gma02g00079 02 865421 867342 GST
Gma03g02058 03 46149285 46151073 Gma10g01360 10 40319190 40321641 PCT
Gma10g01360 10 40319190 40321641 Gma19g02097 19 49833167 49840592 PCT