Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01310 ATGATCATTGATCACAAGACAACACCTGTCACCTTAGATGACGTCCAAGGCATGATAGCCTTAATATTTAAAGATCACACAATACTCAAAATGACTAAAATCAGTGTCCCAGAAATTGGAAGAAAATATTTTATTCAAGCACAAAACTTGAAGCCTTATTCCATGTATTGGGGGGAAGTTATGGCTGGCCATGTGGGTAGAGGTGTCTTAGAGGAGGAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGGTTGCTTGTTGAGTATGTTAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGCATAATTCTAGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAATTATTGGAGGACTCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCAGCAGAGAAGGCTAGAAATAGACTCATGAGGAAGCAGCAATTTCACCAGCAACAACAACAACAACAAGAACAGTTGCAGCAGCAGCATCAGGCACAACAACAACAAATGCAATTCAACTTTGACATGAAAGGCATCATGGCCATGCTTGAGGACAACATCCATAGAACACCTTATATATCTCAATCAAGACAAGAAATGATCAACATGCACCAAAACACCACAGAAGAGCAAGGATACTTGTACTCTATGCTCAATGACAACTCTTCTGCTTCTTCTGCACCAGAGACCTCTGCAGAAGAAGTTTTGTGGGATGGTCTGTGGAACATAGATGATGTTCATGGCAATTTCAGTGTAGCTAGTGCAGCAAGCAAAGTTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 963 0.4237 MIIDHKTTPVTLDDVQGMIALIFKDHTILKMTKISVPEIGRKYFIQAQNLKPYSMYWGEVMAGHVGRGVLEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRLMRKQQFHQQQQQQQEQLQQQHQAQQQQMQFNFDMKGIMAMLEDNIHRTPYISQSRQEMINMHQNTTEEQGYLYSMLNDNSSASSAPETSAEEVLWDGLWNIDDVHGNFSVASAASKVGLYNLVAPFC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01310 320 MobiDBLite consensus disorder prediction 196 219 - -
Gma10g01310 320 SMART sant 129 177 IPR001005 -
Gma10g01310 320 SMART sant 76 126 IPR001005 -
Gma10g01310 320 CDD SANT 134 175 IPR001005 -
Gma10g01310 320 ProSiteProfiles Myb-like domain profile. 76 124 IPR001005 -
Gma10g01310 320 MobiDBLite consensus disorder prediction 176 219 - -
Gma10g01310 320 CDD SANT 79 124 IPR001005 -
Gma10g01310 320 Gene3D - 77 129 - -
Gma10g01310 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 179 IPR017930 -
Gma10g01310 320 ProSiteProfiles Myb-like domain profile. 125 175 IPR001005 -
Gma10g01310 320 Coils Coil 200 220 - -
Gma10g01310 320 Gene3D - 134 178 - -
Gma10g01310 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 128 IPR017930 -
Gma10g01310 320 PANTHER MYB TRANSCRIPTION FACTOR 57 311 - -
Gma10g01310 320 Pfam Myb-like DNA-binding domain 130 174 IPR001005 -
Gma10g01310 320 Pfam Myb-like DNA-binding domain 77 124 IPR001005 -
Gma10g01310 320 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 57 311 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma10g01310 320 MobiDBLite consensus disorder prediction 176 194 - -
Gma10g01310 320 SUPERFAMILY Homeodomain-like 76 171 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01310 Gma-Chr10 38923986 38926542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01310 72 320 MYB Transcription Factor Family AT4G13480 53.676 7.44e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g01310 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01310 K09422 - gmx:100795981 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01310 10 38923986 38926542 Gma20g00816 20 32971018 32972552 GST