Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01255 ATGGAAACCATTGGTTCTGTGGATGACCTCTTGGATTTTTCATCAGACATAGGCGAGGAAGATGATTACGATGACAAACCTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGCGCCGGCCCATCGTTGTTTAACCCATTGGTCCAGGTTGATCCAAACCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCTGTTGAAACGTTTGTCGACCTATCATCTATTCAACCCGGCACAACCAAGAACCAAAAATCAGCCCCAGTACTTGAGTGTAGCACAGGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTGTGATCACCTGAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCATCGCCCTGGCCTTGCTGAGAATTCTAGTCAGCAAGTCTGGTGGAGACAGCCAAGTAATGGAACTTCCAAAGCAGATGAAGGGATGAAAATCTCATCCATCGGTAGAAAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGTCCCTCTGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTCAAGTCTGGGCGGCTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTTTCATAGTGATTTGCATTCTAATTCCCACAGGAAGATAGTAGAGATGAGGAGGCAGAAGCAAATGGGAATGGGATAA 738 0.4648 METIGSVDDLLDFSSDIGEEDDYDDKPRKACPSLNSKCAGPSLFNPLVQVDPNHSFSEFAEEELEWLSNKDAFPSVETFVDLSSIQPGTTKNQKSAPVLECSTGSSNSNNSTNSISLLNSCDHLKVPVRARSKSRSRHRPGLAENSSQQVWWRQPSNGTSKADEGMKISSIGRKCQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFHSDLHSNSHRKIVEMRRQKQMGMG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01255 245 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Gma10g01255 245 MobiDBLite consensus disorder prediction 84 112 - -
Gma10g01255 245 CDD ZnF_GATA 174 221 IPR000679 GO:0006355|GO:0043565
Gma10g01255 245 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Gma10g01255 245 MobiDBLite consensus disorder prediction 1 28 - -
Gma10g01255 245 MobiDBLite consensus disorder prediction 129 164 - -
Gma10g01255 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 232 - -
Gma10g01255 245 Gene3D - 170 242 IPR013088 GO:0006355|GO:0008270
Gma10g01255 245 PANTHER GATA TRANSCRIPTION FACTOR 7 241 - -
Gma10g01255 245 MobiDBLite consensus disorder prediction 141 164 - -
Gma10g01255 245 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Gma10g01255 245 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Gma10g01255 245 PANTHER GATA TRANSCRIPTION FACTOR 1 7 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01255 Gma-Chr10 37068880 37070382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01255 52 245 C2C2-Gata Transcription Factor Family AT3G24050 45.690 4.67e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma10g01255 GATA 3.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01255 - - gmx:100784527 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01255 10 37068880 37070382 Gma10g01255 10 37068880 37070382 ECH