Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01247 ATGGAGGAAGAGAGAGACGTGTCATCGTATGAGTTGTCAGAGGAGAAATATGACCCACTAGAGGAGATCCATCGAGTCATCCAATCGGTAGTTCAATTCGACGAATACCGGAGGACACAGAGGAAGGAGAGCCACAACCTCGTGCGCCGTTTCAAGTTCATGTTGCTGCTCTGGGAAGAGCTTCATGACCTCCTACAACCTTTCCTAGAAATCGGTGTGACTTGGTTAACCAAAGTCAAGGATGTGCTTTTGTTCACCAAGGATTTGTTGAAACTATGTAGCCAAGGAAGCAAGATCCACCTCGCTTTGGAGACCGAGGTAGTTATGATCACGTTTCAGAAAGTGTATGACAAATTAAGCCAAGCATTTGGTGATGTGCCTTGTGATGAAATAGGTATCTTAGATGAAGTCAAGGAACAAGACACGGAACTTGCAATGGATATGATGGTTGTGTTTTCTGACAATGATGACAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCTAAAAAGCTAGAGCTTTATAGTGTTGAGAGTACTCAGAAAATAATTTACCTTTTTAACAAATTCAAACGAATTGCAAGCATGGAAGAAACCGGCATCCTTGATGATCTTGTCATGCCCAAGATGCTTGAGAGGTGCACCTCTTTGGTCATCCCTCATGAGTTTCTCTACCCAATTACACTAGAAATCATGACAGATCTTGTCATTATAACAAGTGGGCAGATTGAAGAATGGTGTGAGAACAACAACTTCAAACTTCCTAAAAAATACAATTCTTTAGGTCAAGAAACTTTGGTTGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGACAAGCAGTGGAGAAGATATGTATGCTATCAAAGGAAAATCCTGAGAACAGGGTTTTGGTTGCTGAACATGGAGGAATGCCATCACTAGTGAAACTCTTGTCCTATCTATATTCAAAAATACAAGAACATGTAGTGAAAACACTTTTGAATTTATCAATTGATGAGGGTAACAAGTGTCTTATATCCATAGAAGGTGTCATTCCAGCTATCATAGAAGTTTTGGAGAATGGTAGTTGTGTGGTTAAGGAGAACTCAGCCGTAGCTTTATTCAGCTTGTTAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTTCCCACCTTTGGTGGATATGTTGAGGAATGGAACAATTAGAGGGAAGAAAGATGTTGTGACAACTCTTTTTAACTTATCTATCAACCATGCAAATAAAAGTAGGGCCATTCGAGCTGGCATTGTGAATCCCTTGCTTCAATTGCTCAAGGACACAAACTTGGGCATGATTGATGAGGCTTTCTTTGTTTT 1349 0.4025 MEEERDVSSYELSEEKYDPLEEIHRVIQSVVQFDEYRRTQRKESHNLVRRFKFMLLLWEELHDLLQPFLEIGVTWLTKVKDVLLFTKDLLKLCSQGSKIHLALETEVVMITFQKVYDKLSQAFGDVPCDEIGILDEVKEQDTELAMDMMVVFSDNDDRNADSAIIERLAKKLELYSVESTQKIIYLFNKFKRIASMEETGILDDLVMPKMLERCTSLVIPHEFLYPITLEIMTDLVIITSGQIEEWCENNNFKLPKKYNSLGQETLVESLSSIHLEEQRQAVEKICMLSKENPENRVLVAEHGGMPSLVKLLSYLYSKIQEHVVKTLLNLSIDEGNKCLISIEGVIPAIIEVLENGSCVVKENSAVALFSLLMLDEIKEIVGQSNGFPPLVDMLRNGTIRGKKDVVTTLFNLSINHANKSRAIRAGIVNPLLQLLKDTNLGMIDEAFFV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01247 449 Pfam Armadillo/beta-catenin-like repeat 292 331 IPR000225 GO:0005515
Gma10g01247 449 Pfam Armadillo/beta-catenin-like repeat 376 413 IPR000225 GO:0005515
Gma10g01247 449 SUPERFAMILY ARM repeat 264 446 IPR016024 -
Gma10g01247 449 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 303 345 IPR000225 GO:0005515
Gma10g01247 449 PANTHER U BOX DOMAIN-CONTAINING 15 178 - -
Gma10g01247 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 243 448 - -
Gma10g01247 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 176 243 - -
Gma10g01247 449 PANTHER U BOX DOMAIN-CONTAINING 176 243 - -
Gma10g01247 449 PANTHER U BOX DOMAIN-CONTAINING 243 448 - -
Gma10g01247 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 15 178 - -
Gma10g01247 449 SMART arm_5 333 373 IPR000225 GO:0005515
Gma10g01247 449 SMART arm_5 374 414 IPR000225 GO:0005515
Gma10g01247 449 SMART arm_5 292 332 IPR000225 GO:0005515
Gma10g01247 449 Gene3D - 252 447 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01247 Gma-Chr10 36755100 36757885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01247 20 445 U-box Gene Family AT5G42340 46.979 2.02e-133 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01247 - - gmx:100789656 700.664