Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01227 ATGACAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAACAACTGTAAGGCACGATTATCAGAAATATTTAGGTAATCCTGATAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAATAATAACCACAGTAACTATATATCATTGTCCCCGTCAGAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGATGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACCGTGGTATTTCTATTTTAGATTTGACTGAAGAGAATGAACAAATCCGACATCCGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAGACAAGAAAGCACTAAAAGCAACTAATGGAAGGTCTTCGTTACCTGTCATTTCTGATTCTTCTAATACATCTAGAAATGCCTTCATTGGAAAGTATAAACTAGATATTAAAACACTTCCAGGTCCTAATATATCTGTGGACCATGGCAAGGGTATTTCTCTGTCTAATGATTCTCAATTACAAAATGAAAAGCAAGTATCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGGAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACAATGGAAAAACAATTGGCTGAACAGAGCAACCACAAAACCAAAGATGTTGAACAGAGTCATGGTCATTCAGTTTCTAGCAGTACAGTGTCACCGGTTAGTGTTGATGACATAGTTGCTGGAGAGAGAGGCAATGGTAGAGGGAAAGGAAAGGAAGTACTTGCTTATCGTTCACCACATAGGCTGACTTTTCGTACTGCTAGCAGCCCTGTGACCAATTATGAAGAGATCAATGGTCCTAGTAATGCTATAAGAAATCCACTTCAATACTCTGGGGGGCAAGGTGGTCGGAGAACTACACATAATGAGAGGAATGCTAATTGGCACTTGCATGATGTAAATGGGCATCATTTGAGGATAAATAATGATGTTGGAAGATTTATCAATGGACACAATACAACCGGAATGGACAGAAGAAACACTGGGAATGGTCAAAGCAGCAATCATATACATGGTTCTCAGTCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCATCGTACTGCTGACATTTTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGGTTTATGTTCCGTGGTTCAACTggggattcatcaagctcatcccggaaccctgtctcggatcctgaagtgattgagttgttatccccaccaaggggttcatcaagctcatcccggacttctgtcttggatcatgaagtggttgatttgttatccacaccaaggtatgccaacagatcatcTGAAGATTTAGATGATAATGACAATAATAGCTCGGAAGCTCGGGCAAGGCAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCACGATGATCCTTTTGAAGGCAGAGGGATTGATGAAGATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTATGCGTGCAACTATTGATAGCCACAGCATAAGTCAACCGAGACAGCTTCCAAGGGCAATCAGACAGCCTCGTACACGGTTTCCAGAAAATCCTTCTAGAAGGAGAGCTATGGCTCAAGCTTCTTTCTCTAATAGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGAGCACCTAGCACATCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAGTAGGGGATTTCAGTGATATGGGAATTACTGATGGCATCTTTAATGCACGTCGTGATTTCACTGACGCTGATTATGAAATGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTTCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGATGCATGTGCCATATGTCTTGAGACTCCAGTCCAAGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA 2208 0.3936 MTEDMKIDHIVEVPDTPDRTTVRHDYQKYLGNPDKRGRAFNAADENNNHSNYISLSPSEESYSSQNAPIFRRAQTDGAEKMEKGKSISSKVPSKSSHRGISILDLTEENEQIRHPKPAFSHRGSRDNATEDKKALKATNGRSSLPVISDSSNTSRNAFIGKYKLDIKTLPGPNISVDHGKGISLSNDSQLQNEKQVSLPPRVSTSPRGRGHKRLVRNGCISPHNIATMEKQLAEQSNHKTKDVEQSHGHSVSSSTVSPVSVDDIVAGERGNGRGKGKEVLAYRSPHRLTFRTASSPVTNYEEINGPSNAIRNPLQYSGGQGGRRTTHNERNANWHLHDVNGHHLRINNDVGRFINGHNTTGMDRRNTGNGQSSNHIHGSQSDHTAQPTSVIIPDVDQSSGTHRTADILTKRQRKRESPSGFMFRGSTGDSSSSSRNPVSDPEVIELLSPPRGSSSSSRTSVLDHEVVDLLSTPRYANRSSEDLDDNDNNSSEARARQVEADERLARELQEQLYHDDPFEGRGIDEDLAWDLQRAEALMRATIDSHSISQPRQLPRAIRQPRTRFPENPSRRRAMAQASFSNRMSQWRSRATSRTRAPSTSSRGRGPRFPLDMDLDMRLDILEALEDSVGDFSDMGITDGIFNARRDFTDADYEMLLALDEGNHQHTGASSNLINSLPQSTIQTDNFTDACAICLETPVQGEIIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01227 735 MobiDBLite consensus disorder prediction 355 500 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 101 137 - -
Gma10g01227 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 735 IPR013083 -
Gma10g01227 735 MobiDBLite consensus disorder prediction 179 202 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 298 327 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 30 50 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 232 259 - -
Gma10g01227 735 CDD mRING-H2-C3H2C2D_ZSWM2 690 731 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 478 500 - -
Gma10g01227 735 ProSiteProfiles Zinc finger RING-type profile. 690 731 IPR001841 -
Gma10g01227 735 MobiDBLite consensus disorder prediction 76 152 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 562 608 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 573 601 - -
Gma10g01227 735 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 172 734 - -
Gma10g01227 735 SMART ring_2 690 730 IPR001841 -
Gma10g01227 735 MobiDBLite consensus disorder prediction 423 439 - -
Gma10g01227 735 MobiDBLite consensus disorder prediction 177 215 - -
Gma10g01227 735 SUPERFAMILY RING/U-box 683 734 - -
Gma10g01227 735 Pfam Ring finger domain 689 731 IPR001841 -
Gma10g01227 735 MobiDBLite consensus disorder prediction 355 405 - -
Gma10g01227 735 PANTHER OS11G0582100 PROTEIN 172 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01227 Gma-Chr10 35769987 35778218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01227 487 735 C3H Transcription Factor Family AT1G04790 46.545 9.43e-62 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01227 - - gmx:100789823 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01227 10 35769987 35778218 Gma10g01227 10 35769987 35778218 ECH
Gma10g01227 10 35769987 35778218 Gma20g00751 20 29644697 29668363 GST