Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01203 ATGTATTGGGGGGAAGTTATGGCTGGCCATATGGGTAGAGGTGTCATAGAGGAGCAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAAGTTGCTTGTTGAGTATGTCAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAACAAACAAGAACTCTGAGTACTTCGACATCCTTACCTTGACAGTAGCAAGATCGCGACACCACTCCAAAGAGCACGACTTCGGCTATGGCGGTGGTGGGAACAACAGGTAG 270 0.5037 MYWGEVMAGHMGRGVIEEQVWRKGPWTAEEDKLLVEYVRLHGEGRWNSVARLATNKNSEYFDILTLTVARSRHHSKEHDFGYGGGGNNR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01203 89 Pfam Myb-like DNA-binding domain 23 56 IPR001005 -
Gma10g01203 89 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 56 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma10g01203 89 Gene3D - 21 78 - -
Gma10g01203 89 SMART sant 22 81 IPR001005 -
Gma10g01203 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 52 IPR017930 -
Gma10g01203 89 SUPERFAMILY Homeodomain-like 21 57 IPR009057 -
Gma10g01203 89 CDD SANT 25 59 IPR001005 -
Gma10g01203 89 ProSiteProfiles Myb-like domain profile. 22 59 IPR001005 -
Gma10g01203 89 PANTHER MYB TRANSCRIPTION FACTOR 3 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01203 Gma-Chr10 34733389 34734107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01203 18 53 MYB Transcription Factor Family AT4G13480 83.333 3.55e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma10g01203 Myb_DNA-binding 5.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01203 K09422 - gmx:100818237 117.087