Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01200 ATGAGAAGAGGTATTTGTAGCATACAGCTTCAGCCTCTTACACCTGAAGCTACAACTGTTGTCAAGCAAGCTGTGAATCTTGCAACAAGAAGAGGCCATGCGCAAGTGATACCTCTTCATGTTGCAAGTGCCATGCTTGCAACTTCCACAGGCCTTCTTCGTAAGGCTTGTCTTCAATGTCACTCTCATCCTCTTCAGTGCAAGGCTCTTGAGCTTTATTTCAATGTTGCACTCAACCATTTACTGGCTTCCACTTCAAGCCCTCTTTTGGCTCCTCAATATTCCACCCCTTCACTCTCCAATGCCTTGGTTGCAGCCttcaaacgtgctcaggttcaccaacgccgtggttctattgagaaccagcagcaacatattcttgccttgaagatcgaggtggagcagctcgtgatttcaatccttgatgaccctagtgttagtagggtcatgagagaagttggtttctctagaacccttgtgaaaacaagggttgaacaagcTGTTTCAATGGAAGTTTGTTCACAAAAGGCTTCTTCTGATAGGAGCCATGTCAAAGAAAATATCACCAAGCCCCATCATGTTGTTCTTGGTGGTAGTAATAATGTGTCTCCATCATCTGGACCTTTTGGTCAAGTTGTTATTGGCTCTTTCACGAAGCCTAATTTAGACCATGTTAACAATGATGATGTAACTAGTGTGCTGAGTGAGTTGGTGAGGAGAAAAAACATAGTTATTGTAGGGGAGGGTGTGGCCAATGCTGAGGGAGTAGCTAGGGAGGTGATGGAGAGGTTTGAGGTAGGGAATGTTCCTGGGGACTTAAGGTATGTGCAATTTGTGAGCCTTCCTCTCATGTGCTTCAGAAACATTAGCAAGGAGGAGGTTGAACAAAAGCTTATGGAGATTAGAAACCTTGTGAAGAGCTATGTAGGAAGAAGGGTTGTTCTTTACTTGGGTGATCTAAAATGGTTGTTTGAGTTCTGGGCTAATTTTTCTATTTGGGAGCTTCACCCCTTCACAATTCCTGTTGGCAGCCTCAGCCTAAGTTTAAATTTTCACAGTGATTTTCAAGCTCAAGAGAGAAGCAAGGTGTTTTTCAAGGATGTGGCTTTTGAAGATAGAACAGGAGTCAGAAACCATCTAACTTGGTGCAGGGATTGCTTGATAAATTTTGAAAAAGAAGCTCAGAGCATAACTAACTGTATAAGCAAGAAAGTTTGCACTGCTAGTAGCTTACCAATGTGGCTTCAAAATTGTAAGGAAGAGAGAAGTGACATAATGGAAGATCAGCCACGAGATTGTGCTCTTGGATCTGACATTAAAATCAACATGGTTACTTCAAAAAAATCTTGTCCCAAATGTGTTAGCTTGCCAGAATCTGTATCAGTGGTATCTTACCGTAAGTTGTTCCTTTTGTACAAGCTTCTTTTGGCAAATCCTGGGCCAGCAGTGACAGACAAGCTTTATGCATCCAGTTTTGCCAACACGATTGACGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTGTTGCATATTATTCTCCAAAGCTGGTTGAGGACCCTTGA 1563 0.3762 MRRGICSIQLQPLTPEATTVVKQAVNLATRRGHAQVIPLHVASAMLATSTGLLRKACLQCHSHPLQCKALELYFNVALNHLLASTSSPLLAPQYSTPSLSNALVAAFKRAQVHQRRGSIENQQQHILALKIEVEQLVISILDDPSVSRVMREVGFSRTLVKTRVEQAVSMEVCSQKASSDRSHVKENITKPHHVVLGGSNNVSPSSGPFGQVVIGSFTKPNLDHVNNDDVTSVLSELVRRKNIVIVGEGVANAEGVAREVMERFEVGNVPGDLRYVQFVSLPLMCFRNISKEEVEQKLMEIRNLVKSYVGRRVVLYLGDLKWLFEFWANFSIWELHPFTIPVGSLSLSLNFHSDFQAQERSKVFFKDVAFEDRTGVRNHLTWCRDCLINFEKEAQSITNCISKKVCTASSLPMWLQNCKEERSDIMEDQPRDCALGSDIKINMVTSKKSCPKCVSLPESVSVVSYRKLFLLYKLLLANPGPAVTDKLYASSFANTIDEDKIFLTVAEAVAYYSPKLVEDP 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01200 520 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 330 - -
Gma10g01200 520 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 331 439 - -
Gma10g01200 520 ProSiteProfiles Clp repeat (R) domain profile. 8 171 IPR004176 -
Gma10g01200 520 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 330 - -
Gma10g01200 520 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 331 439 - -
Gma10g01200 520 Pfam Clp amino terminal domain, pathogenicity island component 24 55 IPR004176 -
Gma10g01200 520 Pfam Clp amino terminal domain, pathogenicity island component 131 168 IPR004176 -
Gma10g01200 520 SUPERFAMILY Double Clp-N motif 13 164 IPR036628 -
Gma10g01200 520 Gene3D - 9 170 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01200 Gma-Chr10 34644795 34648094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01200 473 519 Inorganic Solute Cotransporters AT1G22150 61.702 2.06e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01200 - - gmx:100818716 770.77