Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01199 ATGGCTCCTACACTTCAACGTGCACTTTCTCATCTGCTCACTCTTGTAGCTTCACTTTCAATACTCCTAGTGGTACCCTCCTCTTGTTTCAACCCTAAAAAGATTGTGAATGCTTCCTATGCTTCATACTCCTTATATGGTTCAGATTGGTCTCCTGCTGTAGCCACTTGGTATGGACCAGCCCAAGGGGACGGTAGTGAAGGTGGTGCTTGTGGTTATGGAAGTGCTGTTGGGGAACCTCCTTTCTCATCATTGATGTCGGCGGGAAGCCCTCTTTTGTTTGAATCAGGCGAAGGCTGTGGTTCTTGTTACGAGATGAAGTGCACTGGGAATTATGCATGCTCAGGCAATTCTGTAAGGGTAGTCATCACTGATAGCTGTCCTGGGTGTGGTTCAGATGCTCAATATCATTTTGATTTGAGTGGCACTGCTTTTGGTGCGATGGCAATTTCAGGCCAAGACGAGAAGCTACGCAATGCTGGCAAAATAGACATTCAATTTAGAAGAGTTGAATGCAACTATCCCGGTGTATCAATATCTTTTCGCGTGGATCCTGGTTCCAACAAGGAATATTTTGCAATCTTGATTGAATATGAGAGTGGTGATGGTGACCTAGACAAAGTTGAACTCAGGGAAGCACATGCTTCCGCCCAATGGTACTCCATGCAGCGATCATGGGGTGCAGTTTGGAAACTTGACAAAGGGTCAGCACTTGTGGCACCATTCTCCATCAAGCTAACCACTCTCAAATCTGGCAAGACCATTGTGGCTAACAATGTGATCCCTGCTGGGTGGATTATTGATCAGACTTATAGATCAATTGTCAATTTTTAA 834 0.452 MAPTLQRALSHLLTLVASLSILLVVPSSCFNPKKIVNASYASYSLYGSDWSPAVATWYGPAQGDGSEGGACGYGSAVGEPPFSSLMSAGSPLLFESGEGCGSCYEMKCTGNYACSGNSVRVVITDSCPGCGSDAQYHFDLSGTAFGAMAISGQDEKLRNAGKIDIQFRRVECNYPGVSISFRVDPGSNKEYFAILIEYESGDGDLDKVELREAHASAQWYSMQRSWGAVWKLDKGSALVAPFSIKLTTLKSGKTIVANNVIPAGWIIDQTYRSIVNF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01199 277 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Gma10g01199 277 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Gma10g01199 277 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Gma10g01199 277 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Gma10g01199 277 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Gma10g01199 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Gma10g01199 277 PANTHER EXPANSIN-B3 13 277 - -
Gma10g01199 277 Gene3D - 33 173 IPR036908 -
Gma10g01199 277 SMART dpbb_1 86 167 IPR007112 -
Gma10g01199 277 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Gma10g01199 277 PRINTS Major pollen allergen Lol pI signature 127 142 IPR005795 GO:0005576|GO:0019953
Gma10g01199 277 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Gma10g01199 277 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Gma10g01199 277 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Gma10g01199 277 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Gma10g01199 277 SUPERFAMILY Barwin-like endoglucanases 40 176 IPR036908 -
Gma10g01199 277 Gene3D - 174 277 IPR036749 -
Gma10g01199 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 177 IPR007112 -
Gma10g01199 277 Pfam Expansin C-terminal domain 179 262 IPR007117 -
Gma10g01199 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
Gma10g01199 277 SUPERFAMILY PHL pollen allergen 179 273 IPR036749 -
Gma10g01199 277 PANTHER EXPANSIN-B2-RELATED 13 277 - -
Gma10g01199 277 Pfam Lytic transglycolase 87 167 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01199 Gma-Chr10 34590003 34592357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01199 27 277 Expansin Gene Family AT1G65680 58.167 2.12e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01199 - - gmx:100777550 561.222