Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01180 ATGTCGACAATCAAGGGCGTTGTGGCTCACATAAAAAATCTCACCTGTAGTAGTAATATCATGCGAGGGAGCGCCATTGACAACATCAGCATCAACACCACCACCAGCACGGAGCAAGGTTTCGCCTTGATCATCCGAGTTCGCGAGGAAGAACAAGCTATTTGGAATAGTTATCCACTGCTATTGTACTTTGAAGCCGAGTTGCATAGGCCTGATTCAGCAACAACAACAGCATCACTGTGTTGCTCAATATGCTTGGCAGATTACAAGAACACCGAGTGGTTGAAGCTTCTACCTGATTGCGGTCACATGTTTCACAGGGACTGCATTGACATGTGGTTGCAGCTAAACTTGACATGCCCCCTTTGTCGAACCTCACCACTCTTAACTCTGCTAACTGGAGTTGCTCCAATggcaacaaggagagcctaa 432 0.4468 MSTIKGVVAHIKNLTCSSNIMRGSAIDNISINTTTSTEQGFALIIRVREEEQAIWNSYPLLLYFEAELHRPDSATTTASLCCSICLADYKNTEWLKLLPDCGHMFHRDCIDMWLQLNLTCPLCRTSPLLTLLTGVAPMATRRA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01180 143 Pfam Ring finger domain 82 124 IPR001841 -
Gma10g01180 143 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Gma10g01180 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 128 IPR013083 -
Gma10g01180 143 SMART ring_2 82 123 IPR001841 -
Gma10g01180 143 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 29 132 - -
Gma10g01180 143 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 132 IPR045899 -
Gma10g01180 143 SUPERFAMILY RING/U-box 63 127 - -
Gma10g01180 143 CDD RING-H2_PA-TM-RING 81 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01180 Gma-Chr10 33812167 33813679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01180 51 143 C3H Transcription Factor Family AT2G35910 50.515 8.87e-25 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01180 - - gmx:102670414 132.494