Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01176 ATGACTCTCATGACTCCTCCTCCAATGGATGTAATCGATTCTTTCTTTCTTTTTCTTTCTTTTCTGCCTCAACTGAATTCGATTGCATTCACCCAGCAACAGCAGCAGCAGGAGCACGATGAGATGCTGGTTCCTCGCTCTGACCTGCCTGAAGGTCCTCAACCTATGGAAGAAATCCCAAGTacagtggatgctccaacagtggatgctccaacagtggatgATACACCAACTGCAAAATTCACTTGGACCATTGACAATTTTTCTAGTATTTCCCAAAAACTATTTTCTGACATTTTCTGTGTAGGGGGCTATAAGTGGCGGATACTTATATTTCCAAAGGGAAATGGTGCTGGCCATCTGTCAATGTATATAGATGTTGCAGATTCAGCTACATTGCCCTATGGTTGGAGTAGATATGCCCACTTCAACTTGACTGTTGTTAATCAAATTCATAGTAAATATTCAATAAGAAAAGATTCACAACATCAGTTCAATGCACGTGAGAGCGACTGGGGTTTCATTAATTTCATGCCACTTGCTGAATTGTATGATCCTGCTAGAGGTTATCTTGTGAATGATACATGCATAGTTGAAGCTGACATTTCTGTGCGTAAAGATATGGATTGGTCATATGATTCAAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGTGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTAGTGTGGCAACGAAAGAGTTAACAACGTCTTTTGGATGGGATACATATGATTCGTTCATGCAGCATGATGTCCAAGAGCTTAATAGGGTTCTTTGTGAAAAGCTAGAAGGCAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGCAATTGTTTGAAGGACACCATATGAACTATATTGAATGCATAAATGTGGATTATAAATCAACAAGGAAAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGACGTATATGCTTCTTTTGATAAGTATGTGGAAGTGGAACAACTTGAGGGTGATAACAAGTATCATGCTGAGCACTATGGTTTACAGGATGCTAGGAAGGGTATGTTGTTCATTGATTTCCCACCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTACGATTGTACGCGAGACACTATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTGCAACTAGATCTTGATATGGATAATGGGAAATATCTATCTCCTGACGCAGACAGAAGTATTCGCAATTTTTATACACTTCACAGTGTTTTGGTTCACAGTAGTGGGGTGCATGGCGGACACTACTATGCTTACATTAGGCCAACACTATCAAATCAGTGGTTTAAATTTGACGATGAGCGAGTAACAAAAGAAGAATCCAAGAGGGCTTTGGAAGAACAGTATGGTGGTGAAGAAGAGTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATAAAATAATTTGTAATGTGGACGAGAAGGACATTGCTGAACACCTTAGAATGAGATTAAAGAAAGAACAAGACGAAAAAGAGCTGAAGAGGAAGGAGAAGGCTGAGGCTCACTTGTACACCACCATAAAGGTTGTTGCTTGTGATGAAGATCTACGTGAACAGATTGGAAATAATATACACTTTGATCTTGTGGATTATGATAAAGTACGAAGTTTTCGTGTTCAAATAAACATGCCTTTTATGGTTTTCAAGGAAGAAGTTGCCAAAGAGTTCGGCATACCCATCCAGTATCAACGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATATAGGCCAAATAGAACACTGACACCTCAGGAAGAAGCACAATCAGTTGGACTGCTAAGAGAAGTTTCCACTAAAGCAAATAATGCAGCGCTGAAGTTATTTTTGGAACTAGAAATGGGGCAGGATTTGCGGCCTATTCCTCCTCCAGAGAAGTCAAAAGAGAATCTCTTGCTTTTCCTTAAACTTTATGAGCCTTCAAATGAGAAGCTTCGGTATGTTGGGCGGCTTTTTGTGAATAGTAGTGGGAAGCCAGAAGATATACTGGTAAAACTAAATGAAATGGCCGGATATGATCCTGATCAAGATATAGACATGTTTGAGGAGATCAAGTTTGTGCCTAATGTCATGTGTGAACGGGTTGACAAGAAATCCACATTCCGTGAGAGTCAGCAGCTTGAGGATGGTGATATTATTTGCTTCCAAAAGTCCTCCCCCCAAACTGGAAGCGGAGAGCGATATCGCTATCCAGATGTTCCTTCTTTCTTGGAATATGTGCATAACCGTTTGGTTGTTCGCTTTAGGACTTTGGAGAAACCAAAGGAGGATGAATTTAGTCTTGAGCTGTCAAAGCTTGACTCCTATGACAATGTTGTTGAAGAAGTTGCTCAACATATTGGTTTGCATGATCCTTCTAAAATTAGACTCACATCTCATAACTGCTACTCCCAGCAACCTAAAGCACAGTCTATCAAGTTCCGAGGAATGGAACATTTGACAGACATGCTAATTCACTCTAATCAGACTTCTGATATTCTATACTATGAAGTATTGGATATCCCTCTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTACTTTCCATCATGCTACCAAGGATGAAGTTGTGATTCATACTATTAGATTACCGAGACATAGTACTGTGTCAGATGTAATTAATGATCTTAAATCAAAGGTAGATCTATCACATCCTGATGCAGAACTTAGATTGCTTGAAGTTTTCTATCACAAGATTTATAAGATTTTCCGTGTCAATGAAAAGATTGAGAACATTAATGATCAATATTGTGCACTTCGAGCAGAGGAGATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAGCAAGTTCAGAATTTTGGACATCCTTTTTTATTGGTTATCCGTGAGGGTGAGACATTGGCTGAAGTCAAATTGCGAATACAGAAAAAGTTGCAAGTTCCAGATGAGGAGTTTTCAAAGTGGAAGTTTGCATTTTTGTCGTTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTGTATCCACTCGGTTTCAGAGAAGGGATATCTATGGTGCATGGGAGCAATATCTCGGACTGGAACACATCGACAGTGCTTCAAAAAGGTCGAACACAGCCAATCAGAATCGTCACGAGAAGGCTGTAAAAATCTATGATTAG 3423 0.3897 MTLMTPPPMDVIDSFFLFLSFLPQLNSIAFTQQQQQQEHDEMLVPRSDLPEGPQPMEEIPSTVDAPTVDAPTVDDTPTAKFTWTIDNFSSISQKLFSDIFCVGGYKWRILIFPKGNGAGHLSMYIDVADSATLPYGWSRYAHFNLTVVNQIHSKYSIRKDSQHQFNARESDWGFINFMPLAELYDPARGYLVNDTCIVEADISVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPSVSIPLALQSLFYKLQYSDTSVATKELTTSFGWDTYDSFMQHDVQELNRVLCEKLEGKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVEQLEGDNKYHAEHYGLQDARKGMLFIDFPPVLQLQLKRFEYDCTRDTMVKINDRYEFPLQLDLDMDNGKYLSPDADRSIRNFYTLHSVLVHSSGVHGGHYYAYIRPTLSNQWFKFDDERVTKEESKRALEEQYGGEEELPCINPGFDHSPFRFTKHSNAYMLVYVRESDKDKIICNVDEKDIAEHLRMRLKKEQDEKELKRKEKAEAHLYTTIKVVACDEDLREQIGNNIHFDLVDYDKVRSFRVQINMPFMVFKEEVAKEFGIPIQYQRFWLWAKRQNNTYRPNRTLTPQEEAQSVGLLREVSTKANNAALKLFLELEMGQDLRPIPPPEKSKENLLLFLKLYEPSNEKLRYVGRLFVNSSGKPEDILVKLNEMAGYDPDQDIDMFEEIKFVPNVMCERVDKKSTFRESQQLEDGDIICFQKSSPQTGSGERYRYPDVPSFLEYVHNRLVVRFRTLEKPKEDEFSLELSKLDSYDNVVEEVAQHIGLHDPSKIRLTSHNCYSQQPKAQSIKFRGMEHLTDMLIHSNQTSDILYYEVLDIPLPELQCLKTLKITFHHATKDEVVIHTIRLPRHSTVSDVINDLKSKVDLSHPDAELRLLEVFYHKIYKIFRVNEKIENINDQYCALRAEEIPEEEKNLGSHDRLIHVYHFLKDTTQNQQVQNFGHPFLLVIREGETLAEVKLRIQKKLQVPDEEFSKWKFAFLSFGRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHIDSASKRSNTANQNRHEKAVKIYD 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01176 1140 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 36 1067 - -
Gma10g01176 1140 CDD peptidase_C19C 219 547 - -
Gma10g01176 1140 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 221 545 IPR028889 -
Gma10g01176 1140 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 36 1067 - -
Gma10g01176 1140 Coils Coil 561 581 - -
Gma10g01176 1140 SMART math_3 80 183 IPR002083 GO:0005515
Gma10g01176 1140 Gene3D Cysteine proteinases 218 546 - -
Gma10g01176 1140 CDD MATH 80 202 IPR002083 GO:0005515
Gma10g01176 1140 Pfam MATH domain 85 203 IPR002083 GO:0005515
Gma10g01176 1140 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 222 237 IPR018200 GO:0004843|GO:0006511
Gma10g01176 1140 ProSiteProfiles MATH/TRAF domain profile. 78 202 IPR002083 GO:0005515
Gma10g01176 1140 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 647 901 IPR024729 -
Gma10g01176 1140 Pfam Ubiquitin carboxyl-terminal hydrolase 221 542 IPR001394 GO:0004843|GO:0016579
Gma10g01176 1140 SUPERFAMILY Cysteine proteinases 216 570 IPR038765 -
Gma10g01176 1140 Gene3D - 827 924 - -
Gma10g01176 1140 SUPERFAMILY TRAF domain-like 75 207 - -
Gma10g01176 1140 Pfam Ubiquitin-specific protease C-terminal 911 1119 IPR029346 -
Gma10g01176 1140 Gene3D - 707 826 - -
Gma10g01176 1140 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 76 217 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01176 Gma-Chr10 33686508 33713340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01176 328 510 Miscellaneous Gene Families AT2G24640 28.191 1.94e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01176 K11838 - gmx:100337654 2230.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01176 10 33686508 33713340 Gma20g00704 20 27113331 27181382 GST
Gma19g01938 19 48536858 48538460 Gma10g01176 10 33686508 33713340 PCT
Gma03g01897 03 44887745 44889844 Gma10g01176 10 33686508 33713340 PCT