Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01158 ATGTCACCACAAAGGATTTTTCATGAGGTTGAAAAGGAGCTTTCTCTCAAAAATGACCATCAGAAAATCCAAGATGAAGTGCAGCCCAGACAAGAAATGGAATCAGATCAAAGCTACTTGAGCAGCATGGACAGGGTTGAGGACAAGGAAAAACACATTACTATAGATTTGTCAAATTTGACAGAATTGCAGTGTCCTATATGCCTAGGCATAATTCGTAAAACTCGAGCCGTTATGGAGTGCATGCACCGATTTTGCAAAGAATGCATTGAGAAATCAATGCGCCTTGGTAACAATGAATGCCCCGTTTGTCGCACACATGTTGCTAGTCGACGGTCATTGAGACATGACCAAAACTTTGATACTCTAATTTCTCTTTTGTATCCTGACATGGACAAGTATGAGAAAAAAGAGGAATTGACATTGCATGAGAATGAGAAGACTCACAATAAAGAGATGATCCAAGCTTCTAGTTCCCAGATTCTCCCATGTCAAACTGAAGCATTGTATAGGAAACAGAAAGCCAGGTCAATAGCTGTAGATTCTGAGAGGAAGAGGAGGTCAAAAGCTATCCCTGTTAAAATCTCTGATCAAGCTGAAGCTGAGAATTCGGATAATGATGGTGACGAGAGTCAAGAAGCTTCTAGAAAAACAACTTCTAGTAAAAGGAAAGCATCCTCCACAACTGCTAGTGAAAAGGTTCTCGAAGAAGTTTTTAAAGAAGTGAAAGAGGCTTCTAAAGATTCGTTGGATGAAGATTCTGAGTATGGTATTCGACAAAGTACTTCATTCAAATCTGATCCCTGCGTGAAATCAAGAAGAAAGGAGGCTGCAGGGACTAAGGAAATAACCCTAGAAGTTACTTCCAATCTTGACCACCTTCACGAAATCAAAATAGGTACGTAA 906 0.3996 MSPQRIFHEVEKELSLKNDHQKIQDEVQPRQEMESDQSYLSSMDRVEDKEKHITIDLSNLTELQCPICLGIIRKTRAVMECMHRFCKECIEKSMRLGNNECPVCRTHVASRRSLRHDQNFDTLISLLYPDMDKYEKKEELTLHENEKTHNKEMIQASSSQILPCQTEALYRKQKARSIAVDSERKRRSKAIPVKISDQAEAENSDNDGDESQEASRKTTSSKRKASSTTASEKVLEEVFKEVKEASKDSLDEDSEYGIRQSTSFKSDPCVKSRRKEAAGTKEITLEVTSNLDHLHEIKIGT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01158 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 135 IPR013083 -
Gma10g01158 301 ProSiteProfiles Zinc finger RING-type profile. 65 105 IPR001841 -
Gma10g01158 301 MobiDBLite consensus disorder prediction 234 255 - -
Gma10g01158 301 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Gma10g01158 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 15 223 - -
Gma10g01158 301 MobiDBLite consensus disorder prediction 176 193 - -
Gma10g01158 301 MobiDBLite consensus disorder prediction 18 39 - -
Gma10g01158 301 Pfam Zinc finger, C3HC4 type (RING finger) 64 104 - -
Gma10g01158 301 SUPERFAMILY RING/U-box 47 116 - -
Gma10g01158 301 PANTHER OS11G0578200 PROTEIN 15 223 IPR044592 -
Gma10g01158 301 MobiDBLite consensus disorder prediction 176 277 - -
Gma10g01158 301 SMART ring_2 65 104 IPR001841 -
Gma10g01158 301 CDD RING-HC_RING1_like 65 105 - -
Gma10g01158 301 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01158 Gma-Chr10 32699914 32707855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01158 63 140 C3H Transcription Factor Family AT2G30580 32.099 1.72e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01158 K10695 - gsj:114371622 260.381