Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma10g01155 | ATGCATGAGCTGACCATGAGAGCCTGCAGCACCTGCGTGAAGTATGCATTGACGCATTCCGATGAGGTCCCGTACGGCGACGAGAGCTCCACGATCTCTGGGAGGAGGTCATTGGCGAAGTCAAGGTTGTCCATGGTGACGCACTCCGTGCATTGGAGGAGGAGACCGAGGAGTTTGAGACCGATTCAGAGACTCGAATTCCACACCGATAAGGTTTGGAGCTTGGCTTGGAACCCGACCTCCAGTCTCGACGGTATCCCACTCATCTTCGCTTCTTGCAACGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTAGCCTCTGGGCTTGCACAGCGGTTTTGGATGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGTAAGCTATTGGCCACTGCAAGCTTCGATGCCACCACTGCCTATTTGGGAAAATTGAAGTGTGTGTCTTGGAACGCGGCTGGGACGTTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCCGGGAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACACACGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATATCTTGTTTTCATGTTGCTACGATAATAGTGTTAAGGTTTGGGCGGATGAAGGTGATAGTGATGATTGGCAGTGTTAA | 699 | 0.5179 | MHELTMRACSTCVKYALTHSDEVPYGDESSTISGRRSLAKSRLSMVTHSVHWRRRPRSLRPIQRLEFHTDKVWSLAWNPTSSLDGIPLIFASCNGDKTVRIWEQNLSSSLWACTAVLDETHTRTVRSCAWSPSGKLLATASFDATTAYLGKLKCVSWNAAGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTEDILFSCCYDNSVKVWADEGDSDDWQC | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma10g01155 | 232 | SMART | WD40_4 | 183 | 222 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | SMART | WD40_4 | 110 | 144 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | SMART | WD40_4 | 145 | 177 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | SMART | WD40_4 | 58 | 103 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | PANTHER | WD40 PROTEIN CIAO1 | 40 | 232 | IPR028608 | GO:0016226|GO:0097361 | |
| Gma10g01155 | 232 | PANTHER | CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED | 40 | 232 | - | - | |
| Gma10g01155 | 232 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 190 | 221 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 190 | 221 | - | - | |
| Gma10g01155 | 232 | Gene3D | - | 46 | 146 | IPR015943 | GO:0005515 | |
| Gma10g01155 | 232 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 145 | 178 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | Gene3D | - | 147 | 232 | IPR015943 | GO:0005515 | |
| Gma10g01155 | 232 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 65 | 103 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | Pfam | WD domain, G-beta repeat | 61 | 102 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | Pfam | WD domain, G-beta repeat | 185 | 221 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | Pfam | WD domain, G-beta repeat | 113 | 143 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | Pfam | WD domain, G-beta repeat | 153 | 176 | IPR001680 | GO:0005515 | |
| Gma10g01155 | 232 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 164 | 178 | IPR019775 | - | |
| Gma10g01155 | 232 | SUPERFAMILY | WD40 repeat-like | 57 | 221 | IPR036322 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma10g01155 | Gma-Chr10 | 32380851 | 32382148 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma10g01155 | 55 | 221 | U-box Gene Family | AT2G33340 | 27.717 | 1.96e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma10g01155 | K24730 | - | gmx:100778826 | 330.487 |