Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01115 ATGATGGCGTCATTTGCAGGGACTACTCAGAAGTGCAAAGCATGTGAGAAGGCTGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCATGTTTCAGATGCTACCACTGCAAGGGTACCCTTAAGGATTCTGACCTTAATGTGCGGAAGCCAGTTGAACATAGTAGTGATGCAAAGCTTGCAGGTGAATCCGATCCATTGGGAGAGTTGATGAAGATATTGTTTTATGTGTACCAGAATCCAGTGGAAGTGCCGTGGGAGGCGAACCAATTTGGACTTCCTGAGATTGGGGCAAAATTTTAcatcacacatgcagatctagcagaaataatatcagGAAGATCAAAGGAATCACTTGAAAGGACAAGGTTGCCAACTAAACACTGCCATCAGTTTGAAGAGGCAGCACCTATAAATTCTGTGAAGGCTTAG 447 0.4072 MMASFAGTTQKCKACEKAVYLVDQLTADNKIYHKSCFRCYHCKGTLKDSDLNVRKPVEHSSDAKLAGESDPLGELMKILFYVYQNPVEVPWEANQFGLPEIGAKFYITHADLAEIISGRSKESLERTRLPTKHCHQFEEAAPINSVKA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01115 148 PANTHER OS06G0237300 PROTEIN 2 55 IPR045268 GO:0051015
Gma10g01115 148 Pfam LIM domain 12 51 IPR001781 -
Gma10g01115 148 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 37 - -
Gma10g01115 148 Gene3D Cysteine Rich Protein 2 68 - -
Gma10g01115 148 SMART lim_4 11 62 IPR001781 -
Gma10g01115 148 ProSitePatterns LIM zinc-binding domain signature. 12 46 IPR001781 -
Gma10g01115 148 ProSiteProfiles LIM domain profile. 10 77 IPR001781 -
Gma10g01115 148 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 2 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01115 Gma-Chr10 31037106 31041735 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma10g01115 LIM 2.9e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01115 K09377 - gsj:114406158 147.517