Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01083 ATGTACGGACACCAAATTTCATGTCAATGGTTTGTCTCAGCTGATGGTAATCCTAAACACCGTGTATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAATTATCTGGAGAAGTTGTTAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGCATATCGCCAAAGATGTCTCATTTGCTTTGTCAGAGCTGCACTCAAAGCACATAATTCATCGTGACATAAAAAGTGAAAACATATTGTTTGATTTGGGTAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTCTATGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGTGTGTTGTATTGCTCATGCGGGAACACGTCCTCCTTGTATATGTGTTGGAACACCTCGGTGGATGGCTCCAAAGGTTATGCGGACTATGTATAAAAAAAATCCTATGGATTGGTCCTGGTCCTTTGATTTTGAAAACATCTGTGATGTTGGAAAAAGGCCAATTTTCTCTAGCGAGTTCATAAATACAGACAAGAACAAGATGGAGAGGTTTCTCCATGTTGGGCATTTTTCAGTTGCTTCAATCTATGCACCAATTTTATTTCCTCCTCTTCCTATGATAATCCTAAAGAGAGATGGAGACAATGCTGCCCCTGCAGTGGCTGCTGTTGGCTCACTGAAAACTTTTGATAATCCTTAA 711 0.4037 MYGHQISCQWFVSADGNPKHRVLRSAIFMEYVEGGSLKNYLEKLLEAGEKHVPVELALHIAKDVSFALSELHSKHIIHRDIKSENILFDLGRKRDDGTPTVKLYDFDSAVPLRSTLHVCCIAHAGTRPPCICVGTPRWMAPKVMRTMYKKNPMDWSWSFDFENICDVGKRPIFSSEFINTDKNKMERFLHVGHFSVASIYAPILFPPLPMIILKRDGDNAAPAVAAVGSLKTFDNP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01083 236 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 170 234 IPR007034 -
Gma10g01083 236 SMART serkin_6 3 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01083 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Gma10g01083 236 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01083 236 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 1 152 - -
Gma10g01083 236 Gene3D Transferase(Phosphotransferase) domain 1 10 189 - -
Gma10g01083 236 PANTHER BNAC08G43810D PROTEIN 1 152 - -
Gma10g01083 236 Pfam Protein kinase domain 26 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01083 236 SUPERFAMILY Protein kinase-like (PK-like) 24 155 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01083 Gma-Chr10 28809101 28813696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01083 16 109 MAP Kinase Kinase Kinase AT3G63260 38.298 6.27e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Gma10g01083 Pkinase 6.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01083 - - gmx:100819959 295.819