Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01058 ATGCCCATTTATACTTGTAAATTAAAATTATTTGCAGGCAACTACTTGCAAATTGATGGAGGGTATCCGAGAGCCTCAAACCTATTTGATACAAAACCAAAAGGAAGCAAATGCAACCTGCTAGAATGTGATAGACAAGTTACAAATAGGGTGGGAACAGAAGCAAAAACAAGGCTAGTGAATGCCACTGAGAATTCTGATTTAGAAAGACGAAAACCTAAAAAGTTAGCCTCAAAAGTGGACAGTGCCATAAGGAGTGAGAGTGAGACTTGGTCAAATTTGGGAGCATCCCGCCTCCATAGTTTTGCTTTTGTAGTGGACTGGGCTATAAGGAGTAGCAGGACTGTGTCGAATTTGGGAACATCACCTGTCCCTAGTTTTGCTTCGGCAGAGGACAATAATGTGATGAGGGCTGTTCCTGCACGATTATTCACCTGGGCTGAGCTTGTAGCAGCCACCAACAATTTCTCAATTCACAACCAGATTGGTGCTGGCTGTTTCAGTGTTGTGTACAGAGGTAAACTTGTCGATGGTCGTGAGGTTGCAATCAAGATGGGTGGAACCTGGCCAAAGAGAGAGAGCAAATTGACCTTGTTATCCAGTTTACACCACAAGAACTTGATTGGGCTGGTAGGATTCTGTGAAACGAATTATGAAAGACTCAGTGTGTATGAGTACATGAAGAATGGGTCCTTGTATGATCGTTTGCATGACAAGGGTAGCAGTGTCTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCCTCTCGAGGAATAGAATATCTTCATAATTATGCAGATTCATTTATTATTCACGGAGATATCAAGTCTTCCAACATTCTTCTTGATGCCACCTGGACGGCAAGAGTATCTGATTTTGGATGGAAGTTTATGAGAAACAGACGACGTATAATTGAGAACACTGATCTTGAGTACGTTATTCGAGGTGCATTGTCAGCAGAGAGTGATGTGCATGGGCTTGGAGTTGTAATGTTTGAACTTCTAACAGGAAAGAGACCTACATTCGTGTACGGGGAAGATGGAGGCACCCTATTAAGTAGAAAACATTTGGTAGACTTTGTTGTGACTGCTATTTCAAATGGATTTTTGGAGAAAATTTTGGATCAAAGGGCTGGACAACCCGATGTGAATGAAGCAGAAGCAGTAAAGTTAGTGGTTGATACCGCTATCCGTTGTGTGAATTTGAAACTGAAAGATAGACCAACCATGGCTGACATTGTAGTCAGATTAGAGCGGGCTTTGGCTATTTGTGAATATGATAGCATTTTCAGGGCTTTGGTTTCGAATTGTTAA 1320 0.4159 MPIYTCKLKLFAGNYLQIDGGYPRASNLFDTKPKGSKCNLLECDRQVTNRVGTEAKTRLVNATENSDLERRKPKKLASKVDSAIRSESETWSNLGASRLHSFAFVVDWAIRSSRTVSNLGTSPVPSFASAEDNNVMRAVPARLFTWAELVAATNNFSIHNQIGAGCFSVVYRGKLVDGREVAIKMGGTWPKRESKLTLLSSLHHKNLIGLVGFCETNYERLSVYEYMKNGSLYDRLHDKGSSVLNSWKMRIKIALDASRGIEYLHNYADSFIIHGDIKSSNILLDATWTARVSDFGWKFMRNRRRIIENTDLEYVIRGALSAESDVHGLGVVMFELLTGKRPTFVYGEDGGTLLSRKHLVDFVVTAISNGFLEKILDQRAGQPDVNEAEAVKLVVDTAIRCVNLKLKDRPTMADIVVRLERALAICEYDSIFRALVSNC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01058 439 SMART serkin_6 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01058 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Gma10g01058 439 ProSitePatterns Protein kinases ATP-binding region signature. 162 184 IPR017441 GO:0005524
Gma10g01058 439 Gene3D Transferase(Phosphotransferase) domain 1 227 430 - -
Gma10g01058 439 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 65 430 IPR044815 GO:0004674
Gma10g01058 439 Gene3D Phosphorylase Kinase; domain 1 126 226 - -
Gma10g01058 439 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 65 430 - -
Gma10g01058 439 ProSiteProfiles Protein kinase domain profile. 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01058 439 Pfam Protein tyrosine and serine/threonine kinase 157 419 IPR001245 GO:0004672|GO:0006468
Gma10g01058 439 SUPERFAMILY Protein kinase-like (PK-like) 137 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01058 Gma-Chr10 28199962 28201520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01058 141 426 Receptor kinase-like Gene Family AT3G55950 52.188 3.31e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma10g01058 PK_Tyr_Ser-Thr 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01058 - - gmx:106796655 772.311