LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g01045	ATGTTGTTACTCTTACTCAACTACCTTTTCTTTCTGTTCAATTTTTCTATAACAAAAACCGAAGCCATTGATAACCTTCAGTATCTGAATCACAGCTGTTCAAGCAACAAAACCTTCACTCCAAACAGCACCTACCAATCCAACCTCCAAACCCTCCTCACCTCCCTATCTTCCCATGCCACCACTGCACAATTCTTCAACACCACAACGGGTGGCGGAGACGCCGCCGGCGAAAACATTTACGGCTCCTTCATGTGCCGTGGCGATGTCAGCAACCACACGTGCCAAGAATGTATTAAAACTGCAACCCAACAAATAACCGTACGGTGTCTCAACTCCAAAGAGGCCTTAATTTGGTACCACGAATGTATGGTTCGTTATTCCAACCGTTGTTTTTTCTCCGCCGTGGAAGAATGGCCTAGGTTCAACTTCGTGGATTTCAACGTGAATACGAATTCAACAGAAGGAATCTATGGGTATTGGTTGCTATCCAAAACGTTGAGTGATGCAGTGGGTGAGGCTGTGAAAGCTGGCACCAAGAAGTTTGCAACGAAAAACGCTACCGTTTTTGGGTCTCAAAGAGTGCATACTCTTGTTCAGTGCACGCCAGATCTATCAAGCGAAGATTGCAGTAAGTGTTTGGGTGATATTATGAGAGATATTCCTTTGTGTTGTCTCGGAAGGAGAGGTGGAATGGTTCTATTTCCAAGCTGCACTTTGATGTTTGGGATAGGACAGTTCTACAGAGACTTTCCTCATGGTACACCAGAATCAAAATCAGAAAATGAAAAGGGTTCACTACGAACAATTGTTATAATTGTCCTCCTTGTTGTTGTTGTTCCGGTGATGCTAAGCTTCTTTAGCTATCATTTGATACGAAGAAAAGCAAGAAAGAGAAATTACAAGATTCTTCTAAGAGAAAATTTTGGTCAGGAAAGTGTCACTATAGAGGGTTTGCAATTTGATTTGGATATAATTGCAGCTGCAACAAATAACTTTTCACATGAAAATAAGATTGGTAAAGGTGGATTTGGAGAAGTTTACAAGGGAATTCTTCCTAATGGACGACGTATAGCTGTGAAAAGATTATCGACAAATTCATCACAAGGTTCGGTTGAATTCAAAAATGAGATTTTATCAATAGCAAAACTACAGCATAGAAATCTTGTGGAGTTAATAGGTTTTTGTCTAGAAGTGCAAGAGAAGATTCTTATTTATGAGTACATGTCCAACGGGAGCCTTGATAACTTTTTATTTGATCCTCAACAAAAGAAGTTGAGCTGGTCACAGCGTTATAAAATTATAGAAGGAACTGCACGAGGAATTCTTTATTTACATGAACATTCTCGCCTTAAAGTTATACATCGTGATCTTAAACCAAGTAATATTCTATTAGATGAAAATATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTATTGAACTAAATCAGGATCTTGGGAAAACTCAAAGAATCGTTGGAACATTTGGTTATATGTCTCCAGAATATGCAATATTTGGACAATTTTCTGAAAAATCTGATGTTTTTAGTTTCGGAGTTATGATTATAGAGATTATCACGGGGAGAAAGAATATAAATTCTCACCAATTGCCCGATATTGTAGATAGCCTCATGAGTTATGTTTGGCGACAATGGAAGGATCAAGCACCACTGAGCATATTGGACCCAAATTTGGAAGAAAATTATTCTCAATTTGAAGTCATTAAGTGCATTCATATTGGTTTACTATGCGTTCAAGAAAATAAAAATATTAGGCCTACTATGACAAAAGTTATTTTTTATCTCGATGGTCACACACTTGATGAGTTGCCATCTCCACAAGAACCACCATTTTTCTTTCGAGATATAAAGGATAAAAAAATACCTATGCAACATTTTTCTGTAAATAAGATGTCTACAAGTATATTTTATCCTCGATAA	1947	0.377	MLLLLLNYLFFLFNFSITKTEAIDNLQYLNHSCSSNKTFTPNSTYQSNLQTLLTSLSSHATTAQFFNTTTGGGDAAGENIYGSFMCRGDVSNHTCQECIKTATQQITVRCLNSKEALIWYHECMVRYSNRCFFSAVEEWPRFNFVDFNVNTNSTEGIYGYWLLSKTLSDAVGEAVKAGTKKFATKNATVFGSQRVHTLVQCTPDLSSEDCSKCLGDIMRDIPLCCLGRRGGMVLFPSCTLMFGIGQFYRDFPHGTPESKSENEKGSLRTIVIIVLLVVVVPVMLSFFSYHLIRRKARKRNYKILLRENFGQESVTIEGLQFDLDIIAAATNNFSHENKIGKGGFGEVYKGILPNGRRIAVKRLSTNSSQGSVEFKNEILSIAKLQHRNLVELIGFCLEVQEKILIYEYMSNGSLDNFLFDPQQKKLSWSQRYKIIEGTARGILYLHEHSRLKVIHRDLKPSNILLDENMNPKISDFGMARIIELNQDLGKTQRIVGTFGYMSPEYAIFGQFSEKSDVFSFGVMIIEIITGRKNINSHQLPDIVDSLMSYVWRQWKDQAPLSILDPNLEENYSQFEVIKCIHIGLLCVQENKNIRPTMTKVIFYLDGHTLDELPSPQEPPFFFRDIKDKKIPMQHFSVNKMSTSIFYPR	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g01045	648	ProSiteProfiles	Gnk2-homologous domain profile.	142	247	IPR002902	-
	Gma10g01045	648	Gene3D	Transferase(Phosphotransferase) domain 1	409	612	-	-
	Gma10g01045	648	Gene3D	-	144	247	IPR038408	-
	Gma10g01045	648	Gene3D	-	25	132	IPR038408	-
	Gma10g01045	648	ProSiteProfiles	Gnk2-homologous domain profile.	27	132	IPR002902	-
	Gma10g01045	648	CDD	STKc_IRAK	339	606	-	-
	Gma10g01045	648	Gene3D	Phosphorylase Kinase; domain 1	294	408	-	-
	Gma10g01045	648	ProSitePatterns	Protein kinases ATP-binding region signature.	339	361	IPR017441	GO:0005524
	Gma10g01045	648	ProSiteProfiles	Protein kinase domain profile.	333	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma10g01045	648	SMART	serkin_6	333	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma10g01045	648	SUPERFAMILY	Protein kinase-like (PK-like)	317	625	IPR011009	-
	Gma10g01045	648	Pfam	Protein tyrosine and serine/threonine kinase	336	551	IPR001245	GO:0004672\|GO:0006468
	Gma10g01045	648	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Gma10g01045	648	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	14	249	-	-
	Gma10g01045	648	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	259	633	-	-
	Gma10g01045	648	Pfam	Salt stress response/antifungal	33	129	IPR002902	-
	Gma10g01045	648	Pfam	Salt stress response/antifungal	167	242	IPR002902	-
	Gma10g01045	648	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	259	633	-	-
	Gma10g01045	648	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	14	249	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g01045	Gma-Chr10	27881173	27886465	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma10g01045	9	648	Receptor kinase-like Gene Family	AT4G05200	42.687	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gma10g01045		PK_Tyr_Ser-Thr	7.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g01045	-		-	gmx:100783647	1266.91