Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01021 ATGGATGATTTGGAGCGCTTGAAGAAAATAAGAAATCACCATGGTTTGAGGCACTACTGGGGCCTTCGCGTTCGTGGCCAGCACACTAAGTGTACTGGTCACAGGGAGTTGGTTCTGCCGTCGTCTTCCGTGACCTTGACGCTGACGACTTTCACCACCCTCTTGATAAACAGAGGGAAACTCCATGAAAGCATAACATACAATGGCAAAGCCTTCTCAAATGCAATGAAGAGGAGTAGAGGTTTTGTCACACAAGATTATGTTCTCTGTCCCACTTGA 279 0.4695 MDDLERLKKIRNHHGLRHYWGLRVRGQHTKCTGHRELVLPSSSVTLTLTTFTTLLINRGKLHESITYNGKAFSNAMKRSRGFVTQDYVLCPT 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01021 92 ProSiteProfiles Ribosomal protein S13 family profile. 1 33 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma10g01021 92 SUPERFAMILY S13-like H2TH domain 2 34 IPR010979 GO:0003676
Gma10g01021 92 Pfam Ribosomal protein S13/S18 2 34 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma10g01021 92 Gene3D 30s ribosomal protein s13, domain 2 1 36 IPR027437 -
Gma10g01021 92 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 2 56 - -
Gma10g01021 92 PANTHER 40S RIBOSOMAL PROTEIN S18-LIKE 2 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01021 Gma-Chr10 27054378 27054917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01021 2 35 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 91.176 2.41e-17 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01021 K02964 - osa:107275870 70.8626