Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01018 ATGAAGACGAAGACGCCATTGAAGCAGCTGAAGCTCGCGGTTCCTGCTCAGGAAACCCCCATCACGTCTTTCCTGACTGCAAGTGGAACATTCCATGATGGAGATCTACTCTTGAATCAGAAAGGGTTGCGTCTTATCTCTGAAGAAAAAGAATCACGGCCTTCAGATGGTAAGGAACTGGAATTTGACTTCTTGCTGGACGATCTTGAGACCATCAAAGTAATTGGAAAAGGCAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAGATTGTTTGCTTTAAAGGTTGTTATTCAGATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAAGCGTCACAGTGTCCACATGTTGTAGTTTGCTATCACTCATTCTATCATAATGGAGTAATATCTCTTGTGTTAGAATACATGGATCGTGGTTCTCTAGCAGATGTAATCAAACAAGTTAAAACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTATTGCAAGGCCTTGTTTACCTGCACAATGAAAGGCATGTAATACACAGGGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGTGACATCTGGAGTTTGGGTATGGTAGTGCTTGAGTGTGCCATAGGACGGTTTCCTTATATACAGTCTGAAGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGAAAGCCCCCCACCTTCTGCTCCACCCGATCAGTTCTCCCCTGAGTTCTGTACATTCGTGTCATCCTGCATCCAAAAGGATCCTCGGGATAGATTAACATCATTGGAGCTACTGGATCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGCCACAACTCTTGGTGATGGAACAAGGAAATTTCTTTGAAGAGCTTGAACTTCTCAAGAAAGAGTTGATGGCCACAAGGACTAATTTAAAGCAAGCACTTCCAGATCGCAAAGCTGCTGAAGAAGAGGCTACGAAGCAAAAGATTATTGTAGATTTCTTCTATAAGAAGGTTACTGGTGTTGCATCTCCAAGACGCAACCCAAAATCTAGCTCTGATTCTGATTCAGATACAAACTCTTTTGTCGAGATTCTTTAA 1284 0.4128 MKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELEFDFLLDDLETIKVIGKGSGGVVQLVRHKWVGRLFALKVVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLAAIVESPPPSAPPDQFSPEFCTFVSSCIQKDPRDRLTSLELLDHPFIKKFEDKDLDLGILPQLLVMEQGNFFEELELLKKELMATRTNLKQALPDRKAAEEEATKQKIIVDFFYKKVTGVASPRRNPKSSSDSDSDTNSFVEIL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01018 427 SMART serkin_6 69 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01018 427 Pfam Protein kinase domain 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01018 427 ProSiteProfiles Protein kinase domain profile. 69 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01018 427 Coils Coil 355 375 - -
Gma10g01018 427 CDD PKc_MAPKK_plant_like 67 334 - -
Gma10g01018 427 SUPERFAMILY Protein kinase-like (PK-like) 66 350 IPR011009 -
Gma10g01018 427 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 346 - -
Gma10g01018 427 MobiDBLite consensus disorder prediction 406 427 - -
Gma10g01018 427 Gene3D Phosphorylase Kinase; domain 1 39 149 - -
Gma10g01018 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gma10g01018 427 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 346 - -
Gma10g01018 427 MobiDBLite consensus disorder prediction 404 427 - -
Gma10g01018 427 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gma10g01018 427 Gene3D Transferase(Phosphotransferase) domain 1 151 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01018 Gma-Chr10 26949352 26967072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01018 1 343 MAP Kinase Kinase Gene Family AT5G56580 85.756 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gma10g01018 Pkinase 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01018 K04368 - gmx:100786284 660.218