Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01009 ATGGATCGCAAATCCAAACGCAACCACTCGTTCTCCTACTCCACTCTCTTCAACCTCGAGCCTTTGAAGAACTTTAAACTTCCACGTGAAGATGATGATGATTTTGATTATTATGGGAATAATAGTCAGGAAGATGAGAGCAGAGATAGCCAAGCAGGTGAAAGGGAAAATTACTGTAATGGAAATGTGCACGCAAGGGAGCAGAATTCGTCGAGTAAGAGGGTGTGGTCTGAGAACAGTGATACTGATGATGAGAATAAGGGAAGATATTATGGGACACACATGACACAGGAACGATATCAATCAATGCTTGGAGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCATGTCTAACACTGATCAAAATCAGGTTGTTGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAATTCAAAAGTCAGGGAATGATTGTAGGGGAGCATCACATGCTGAAGAAAGGGCATCGGAATGGCTTCAGGATCAGAAACAAGGAAACTTCAGTCGTGCAGATTTCAAGCAGCAATATGGCACTGATAGGATTATGTATGAACCTGCTGTTTTGGACATTGGGAATGGTATCTCTTATGAGATTCCTCCAATTTACGATAAGTTGGCCCCGATGCTGAACCTTCCAAACTTCCTGGATATCCATGTCGATGAATTTTACTTAAAGAGTACCTTGGATTTGGGGTCCTTGGCTGCAATGAGGGCTGCTGATAAAAGGTTTGGGACTAGAAACCAAGCAGGAATGGGGGAACCCCTATCCCAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACCTCATAAATTCAGCTTGAAAGTGTCTGATGTTGGATTGAATTTATCCATTCCGGAGGGTGCTGCTGGAACCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCGAAGAAGCAAAAGGTAAGGAAAGATTCTGCTTTGATAGAGAAGGAAGAAATGGATAGAATTGGGAAGATTTGGATAAACATTGTAAGAAGAGACATAGCAAAGCATCATAGGAATTTCACTAATTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGACTACTGTCAAAGAGAGGCATGCGCTATCTCCCCTCCCACATTTTGCCTCTTTAGTAGATCACTCAAATGGATTAAGGGTGCTAACATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGCTCTGGAAACGAGTAGATAAAGAGATGGCCGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGTACACTCTTCAGATGCTTTACCCTCGGTAGATGAAAACACAAATGATCAAGATGTACTGTTTGACTCTTCAGACGCTGGGCATAATGAGGAGGAAGATCCGGAAGAGGCTGAATTAAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAGAATGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTCCGCCAGGTGGATGAAGCCGATTCACTTACACGGCAATTAGCAGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGTATCCACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAATAATTGGAATGAGGAACTTGAACGCTTCTGCCCTGAGATTAAAAGACTTCCATATTGGGGAGGACTTTCAGAGCGAGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTTATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACGTTGAATGAGCACCAGCTTAATAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAGGATGTAATTTCTGAGCTGACTAATAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGGGTTGTTTGATAGTAATCGTGGGCAGCTCAATGACAAGAAAGTTATGAGTTTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAAGGGAGCACGTACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTCGGGGAGTTAGAGAATATATACTATCCTGGTGGGCATAACCCGATATCATATGAGATACCAAAACTTGTCTATAAAGAGATTATACAAAGTTCGGCTGTTGGTCATGGTATCTGCAGGGAATCTTTTCAGAAATATTTTAATATTTTTAGACCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATCTGATGGATTTGTCTCCCCAAGAGGTGGCATTTATGGCCACTGGTTCTTTTATGGAGCGACTGTTATTTTCAATGATGAGATGGGAACGGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATCGGTGATCCTGAATGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCCACCAATGCTCCTTTTGAGGCCTTGATGGTCTCACATCAGGATAGGCTTTCATCAAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCACCAACTAGAGCTCCCCCAATTTGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTTCTCATTTAATTGAAGAGATCGATTCTGAATTACCCATTTCACAGCCTGCACTTCAGTTCACGTATGGTATTTTTGGCTCTTCACCGCCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACACTGGATATATTATTGAAGCGCTTACGAGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCCACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTTGATGATGTTCAATTGCAACAGAAGTTAAAGGAAATTCCTCTCCAGGTAAAGAGTAAGCAAAAGAAAAAACCTAACAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTTTGGAGGATCTAACAAACTGTCTAGACCAGGGAACTGCAAATCATGATACTTCCATGGATCCGGAGGGACCAAAGTCCAGTAATAAAAAGACAAAAACAGCTTCTGACAAGCAAAAACCGAGCCCAAAGTGTTCTCAGAAGAAGATGAAAGGCAGTATGTCTAATAGATAA 4404 0.4105 MDRKSKRNHSFSYSTLFNLEPLKNFKLPREDDDDFDYYGNNSQEDESRDSQAGERENYCNGNVHAREQNSSSKRVWSENSDTDDENKGRYYGTHMTQERYQSMLGDHVQKYKRRRKDAMSNTDQNQVVVPLVKSNNGLKIQKSGNDCRGASHAEERASEWLQDQKQGNFSRADFKQQYGTDRIMYEPAVLDIGNGISYEIPPIYDKLAPMLNLPNFLDIHVDEFYLKSTLDLGSLAAMRAADKRFGTRNQAGMGEPLSQYESLQARIKAMPASNSPHKFSLKVSDVGLNLSIPEGAAGTIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVRKDSALIEKEEMDRIGKIWINIVRRDIAKHHRNFTNFHRKQLIDAKRFSDYCQREACAISPPTFCLFSRSLKWIKGANIRTRKLARDMLLLWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVHSSDALPSVDENTNDQDVLFDSSDAGHNEEEDPEEAELKKEALKAAQEAVSKQRMLTNAFDSACLRFRQVDEADSLTRQLAGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEIKRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTNKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGQLNDKKVMSLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELENIYYPGGHNPISYEIPKLVYKEIIQSSAVGHGICRESFQKYFNIFRPENVHRSIFSEDIIVKSGNFGFTHLMDLSPQEVAFMATGSFMERLLFSMMRWERKFLDEVLDFLIETTIGDPECYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPTNAPFEALMVSHQDRLSSNARLLHSAYTYIPPTRAPPICAHCSDRNFSYKMIEELHDPWVKRLFVGFARTSECNGPRKPDNPSHLIEEIDSELPISQPALQFTYGIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKSKQKKKPNKAIRINEEGDASLEDLTNCLDQGTANHDTSMDPEGPKSSNKKTKTASDKQKPSPKCSQKKMKGSMSNR 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01009 1467 MobiDBLite consensus disorder prediction 1413 1467 - -
Gma10g01009 1467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 610 781 IPR014001 -
Gma10g01009 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1384 IPR027417 -
Gma10g01009 1467 MobiDBLite consensus disorder prediction 489 509 - -
Gma10g01009 1467 MobiDBLite consensus disorder prediction 54 76 - -
Gma10g01009 1467 Pfam Helicase conserved C-terminal domain 1209 1319 IPR001650 -
Gma10g01009 1467 MobiDBLite consensus disorder prediction 24 53 - -
Gma10g01009 1467 Gene3D - 593 835 IPR038718 -
Gma10g01009 1467 SMART helicmild6 1236 1319 IPR001650 -
Gma10g01009 1467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1394 IPR001650 -
Gma10g01009 1467 MobiDBLite consensus disorder prediction 1433 1454 - -
Gma10g01009 1467 PANTHER CHROMATIN-REMODELING ATPASE INO80 18 1449 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Gma10g01009 1467 Gene3D - 1179 1430 IPR027417 -
Gma10g01009 1467 SMART ultradead3 594 789 IPR014001 -
Gma10g01009 1467 Pfam DNA-binding domain 352 487 IPR020838 GO:0003677
Gma10g01009 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 826 IPR027417 -
Gma10g01009 1467 CDD SF2_C_SNF 1198 1330 - -
Gma10g01009 1467 MobiDBLite consensus disorder prediction 1416 1432 - -
Gma10g01009 1467 Pfam SNF2-related domain 613 900 IPR000330 GO:0005524|GO:0140658
Gma10g01009 1467 MobiDBLite consensus disorder prediction 489 523 - -
Gma10g01009 1467 PANTHER HELICASE SRCAP-RELATED 18 1449 - -
Gma10g01009 1467 ProSiteProfiles DBINO domain profile. 356 488 IPR020838 GO:0003677
Gma10g01009 1467 Gene3D - 836 905 IPR027417 -
Gma10g01009 1467 Coils Coil 435 474 - -
Gma10g01009 1467 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01009 Gma-Chr10 26662494 26677292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01009 651 899 RAD5 or RAD16-like Gene Family AT1G61140 23.226 4.91e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma10g01009 SNF2_N 1.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01009 K11665 - gmx:100796167 2809.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01009 10 26662494 26677292 Gma10g01009 10 26662494 26677292 ECH