Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01005 ATGTTTATCTCTAGCATTATCTATAAGCTCCCGACTATTATCTACAAGTCAGAAATTATCTACAAGACTACAACAGTCCCTACAAACAAGGACCAGTACCCTCACTCAAGTCTCCCTCTTGTCAAAGGCACCTCTCCAAGCCAACATGTGAAGTTTGAGACCCCACTCAGGCACGTTCACCATGACGTGTCACGGTTCCGAATTTTGTTTCACCAATACCAAGTGGTTGGGAGGGCTCTTCCCATGGAACCAGATCAGCACCCTAAGATCTACCGAATGAAGCTCTGGTCCATCAATAAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTTCTGAGGAAATTGAAAAAGGTGAAGAAGAGCAATGACCAAGTGTTTATTATCAACAAGGATTTTTGTAATAAGGTTGGAAATGTCTTGAGGCAAAGTGTTGCTTTCAGCACAAAAGCACTTGTTTCATCCATGCTTAATTACATTCGCTGCATGTTTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGATCAGTCTCTTAAGGATGTATTTTCTGACTTTGGAGATATGGTTGATAGTAAATTTGGCTCACTTTCATTGCTGTTACATGGTGTCCTATTTCAACCACCCGCCAGCCTCACTTTACCATATGTTCTTCAGTTTCCTTTGTTGTCATTATAA 681 0.4141 MFISSIIYKLPTIIYKSEIIYKTTTVPTNKDQYPHSSLPLVKGTSPSQHVKFETPLRHVHHDVSRFRILFHQYQVVGRALPMEPDQHPKIYRMKLWSINKVRAKSKFWYFLRKLKKVKKSNDQVFIINKDFCNKVGNVLRQSVAFSTKALVSSMLNYIRCMFSSKLFIGGLSYGVDDQSLKDVFSDFGDMVDSKFGSLSLLLHGVLFQPPASLTLPYVLQFPLLSL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01005 226 SUPERFAMILY RNA-binding domain, RBD 164 194 IPR035979 GO:0003676
Gma10g01005 226 Gene3D - 61 134 - -
Gma10g01005 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 193 IPR000504 GO:0003723
Gma10g01005 226 Gene3D - 158 198 IPR012677 -
Gma10g01005 226 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 71 129 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gma10g01005 226 PANTHER 60S RIBOSOMAL PROTEIN L18A 82 216 IPR028877 -
Gma10g01005 226 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 82 216 - -
Gma10g01005 226 Hamap 50S ribosomal protein L18Ae [rpl18a]. 70 127 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01005 Gma-Chr10 26485037 26489089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01005 40 131 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 59.574 5.18e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01005 K02882 - gmx:100800228 292.737