Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00977 ATGGGTACTCCGGAATTCCCAGATCTGGGAAAGCACTGTGCTGTCTCGGATTGCAAGCTCATCGATTTCTTGCCCTTCACCTGCGATTGCTGCGACCAGGTGTATTGTTTGGACCACAGAAGTTATAATAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACAGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACCGAGTGCGACCCATCGAATTATGAGAAAGTCACAAAGAAGAAAAAATGCCCTGTCCCTGGGTGCAGAGTGATATTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCACAGTAGAGCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCACAAAGGTGGAATCAAGTTTTTCATTCATGAATCTTTTGAATGGGAGTAAAAAGCAGGAGTCCAAACCCAAGTCAAGTGCAACCTCATGGAGTACAAGCTTTCTTAATGCGGCTTCTAACGTTCGAGCTTCGGCTGAGGCTGGTGTGTCAAAGTTAAGTTCCTGGCAGACAGCAAGGGGTGGGGTTGGACAGAGCCATAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCTAAGTTTTCCTCAGTTACTACTTTGGTTGACCATGTGCAAAAAGTTCATGAAAGGAGTCGCAACCGATCTGGAGCAAAGGTTACAATTGATGTTTGTCCAAAGTGTAGTAGAGGATTTCGAGATCCGGTGGCCCTAGTGGAACATGTTGAGAGGGATCACGGTGGAAGTTCTAGATCATAG 837 0.454 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDCCDQVYCLDHRSYNKHQCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCRVILVFSNTIKCRDCTVEHCLKHRFGPDHKCPGPTKVESSFSFMNLLNGSKKQESKPKSSATSWSTSFLNAASNVRASAEAGVSKLSSWQTARGGVGQSHSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSRNRSGAKVTIDVCPKCSRGFRDPVALVEHVERDHGGSSRS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00977 278 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 277 - -
Gma10g00977 278 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gma10g00977 278 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gma10g00977 278 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gma10g00977 278 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gma10g00977 278 ProSitePatterns Zinc finger C2H2 type domain signature. 251 272 IPR013087 -
Gma10g00977 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 240 IPR013087 -
Gma10g00977 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 277 IPR013087 -
Gma10g00977 278 Gene3D Classic Zinc Finger 193 275 - -
Gma10g00977 278 Pfam C2H2-type zinc finger 213 235 - -
Gma10g00977 278 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 277 - -
Gma10g00977 278 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gma10g00977 278 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gma10g00977 278 ProSitePatterns Zinc finger C2H2 type domain signature. 214 235 IPR013087 -
Gma10g00977 278 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Gma10g00977 278 Gene3D - 86 170 IPR035896 -
Gma10g00977 278 Gene3D - 2 60 IPR035896 -
Gma10g00977 278 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gma10g00977 278 SMART c2h2final6 212 235 IPR013087 -
Gma10g00977 278 SMART c2h2final6 249 272 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00977 Gma-Chr10 24227228 24233411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00977 1 278 C2H2 Transcription Factor Family AT2G41835 63.604 3.17e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00977 zf-AN1 6.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00977 - - gmx:100794037 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00977 10 24227228 24233411 Gma10g00977 10 24227228 24233411 ECH