Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00958 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCACAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTCATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCACAACAGATTAAAGCGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAAATGCAAAGGAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCCGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCTCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGACTCGAACTCAGCAAACACCTCAGGATATCAAACCTGAAGTCAACATGGGTACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCTAAGCCTGGAATTGTAAATGCAGGATTGAATCCGGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAGCAACAACAACAACAGCTCCTCGCACAGGTTCAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGGTTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCATCAACAACAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCGGCCAACAGTACTGGTACCGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCAACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTATATCCAAAGGTTTGATCATGTATGGTACTGATGGAGTGGGCGGTCTTGCATCTTCGACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGAACCCTTCTGAGCATGCTACGGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAATATGGAGACATTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAACCTTCCCTTTACATACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAACTGAACTTTTCTGTTCTTGTGACAATAACAATGAGATTCGCTTCTGGAGTATTAGTCAATATTCTTCCACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCCGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATGCACACGTTACAGGGACACTCTGCCGAGGTACACTGTGTCTGTTGGGATACAAATGGAGATTACTTAGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCTCTGGGGAGTGCATTCATGAACTTAATTCTAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCTAGCTACTCCACTCTTTTGGTTATTGGAGGATACCAGTCATTGGAACTATGGAACATGGCTGAGAATAAATGTATGACAATTCCAGCTCACGAGTGTGTGATATCTGCTCTAGCACAGTCACCACTTACAGGAATGGTTGCTTCGGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAG 2361 0.4396 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQMQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQTRTQQTPQDIKPEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIVNAGLNPGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSHQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGISKGLIMYGTDGVGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFPLHTYSGHTSHVVSLDFHPKKTELFCSCDNNNEIRFWSISQYSSTRVFKGGSTQVRFQPRLGHLLAAASGSVVSLFDVETDRQMHTLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPLTGMVASASHDKSVKIWK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00958 786 CDD WD40 501 786 - -
Gma10g00958 786 MobiDBLite consensus disorder prediction 324 408 - -
Gma10g00958 786 Gene3D - 639 786 IPR015943 GO:0005515
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
Gma10g00958 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Gma10g00958 786 Pfam LisH 10 36 IPR006594 GO:0005515
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Gma10g00958 786 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 786 - -
Gma10g00958 786 Pfam WD domain, G-beta repeat 586 623 IPR001680 GO:0005515
Gma10g00958 786 Pfam WD domain, G-beta repeat 546 579 IPR001680 GO:0005515
Gma10g00958 786 Pfam WD domain, G-beta repeat 752 786 IPR001680 GO:0005515
Gma10g00958 786 Pfam WD domain, G-beta repeat 668 703 IPR001680 GO:0005515
Gma10g00958 786 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Gma10g00958 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 786 IPR044716 GO:0003714
Gma10g00958 786 Coils Coil 87 107 - -
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 583 623 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 498 537 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Gma10g00958 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Gma10g00958 786 SMART Lish 8 40 IPR006594 GO:0005515
Gma10g00958 786 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Gma10g00958 786 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
Gma10g00958 786 PRINTS G protein beta WD-40 repeat signature 773 786 IPR020472 -
Gma10g00958 786 SUPERFAMILY WD40 repeat-like 499 786 IPR036322 GO:0005515
Gma10g00958 786 MobiDBLite consensus disorder prediction 321 414 - -
Gma10g00958 786 Gene3D - 481 638 IPR015943 GO:0005515
Gma10g00958 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gma10g00958 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00958 Gma-Chr10 20883944 20902003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00958 499 746 U-box Gene Family AT2G33340 26.792 9.37e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma10g00958 WD40 0.011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00958 - - gmx:100797756 1503.03