Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00945 ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCGGCTGGGGCGGCGAGATGTGGTTTGTCCTAGCTGTAATTTGGGATTTGTTCATGAACTTAATGATATTGTCCATGTTAATCCTTTTGACCTCTTTGGAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTAATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGGCGAAGCCATGACATCAGGGTGCGAACAGATTCAAATCCTGAACACAGTGCAAGTTTTGCTCCTCTGTTGATCTTTGGTGGCCACATACCTTTTAGATTGTCCAGACATGGTGGCTTTGAAGCTCTATTTAATGGGGCTCCAGGAATCGGTCTGACACAGGGTAACACAGGCGATTATTTTATCGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAACAACAGGCAAGGTCCCCTGCCGGCATCAAGGTCCTCGATCGATGCAATGCCTACCATCAAGATCGTGCAGAGGCATCTTCGATCAGATTCGCATTGTCCGGTGTGCAAAGATAAATTTGAACTGGGATCCAAAGCAAGACAAATGCCATGCAACCATTTATATCACTCAGATTGTATTGTTCCATGGTTGGTGCAGCATAACTCCTGCCCCGTTTGCCGCCAAGAACTGCCGCCACAAGGATTGAGTAGTAGTAACGGTGGCGCCAATGGTAGAAGTAGAAGTGCAAGGGTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCACACCAACACCAACTATCCCTGAGAATAGCCATCATCATCATGCTGGGTATTCTGGGTGGCCATTTGAATGA 930 0.4602 MSNSRNTHWCYSCRRPVRLGRRDVVCPSCNLGFVHELNDIVHVNPFDLFGMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRVRTDSNPEHSASFAPLLIFGGHIPFRLSRHGGFEALFNGAPGIGLTQGNTGDYFIGPGLEELFEQLSANNRQGPLPASRSSIDAMPTIKIVQRHLRSDSHCPVCKDKFELGSKARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSSNGGANGRSRSARVSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSTPTPTIPENSHHHHAGYSGWPFE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00945 309 SUPERFAMILY RING/U-box 166 233 - -
Gma10g00945 309 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Gma10g00945 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 293 - -
Gma10g00945 309 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Gma10g00945 309 SMART ring_2 186 226 IPR001841 -
Gma10g00945 309 CDD RING-H2_RNF126_like 186 227 - -
Gma10g00945 309 Pfam Ring finger domain 185 227 IPR001841 -
Gma10g00945 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 293 - -
Gma10g00945 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Gma10g00945 309 MobiDBLite consensus disorder prediction 234 251 - -
Gma10g00945 309 MobiDBLite consensus disorder prediction 269 294 - -
Gma10g00945 309 MobiDBLite consensus disorder prediction 234 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00945 Gma-Chr10 18514048 18516674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00945 72 243 C3H Transcription Factor Family AT5G01980 38.068 2.91e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00945 K11982 - gmx:100787242 627.091