Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00886 ATGTTCGAGgagttggtttatgttactgttggtacaatcaCGAGGATTGTTATGGACAATCATTCATGGTGTTATGCAGCTTGCATTCAGTGCCATAAGAAAACAGATGTCTATACAGAACCGTTTGTGTGCCCATGTGGCAAGCATAATGATCGAGCTGTGCTTAGATATAGAGTTGAAGTGATGGTCAGTTATAAAGATGAAAGCACAAAATTTCTCCTATGGGATCGTGAATGCATCGAATTCATTGGGCAGTCAGCTGATGAAGTCAATACCCTCAAAGTAGAAGATGGTGATCTGGATTTAAATGTCTCCCCAAAAGCACTTGATAAACTACTGGGTCATCTGCTCGCCTTCAAAGTCAAAATCCAGCTGCAATATAAAAATTTTGTTGTTTTGAAATGCTCAACTAACTTAACTTTAATTAATGATGTTCTGGACATGTTGCCTGATGCTGAGACATGTTCAAAGATTAAAGTTACAACCCCGTTTGATTCCAATGATCCCGTCCACAATGAATCTTCATTTCAAGAATGTGATGATGAAGCAAGAAGCTCCCAGATTTCACCAGCTCATCTATCGTCCAACAAATTAGCAAAACATGACCAGATTGAATAG 618 0.3706 MFEELVYVTVGTITRIVMDNHSWCYAACIQCHKKTDVYTEPFVCPCGKHNDRAVLRYRVEVMVSYKDESTKFLLWDRECIEFIGQSADEVNTLKVEDGDLDLNVSPKALDKLLGHLLAFKVKIQLQYKNFVVLKCSTNLTLINDVLDMLPDAETCSKIKVTTPFDSNDPVHNESSFQECDDEARSSQISPAHLSSNKLAKHDQIE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00886 205 MobiDBLite consensus disorder prediction 181 196 - -
Gma10g00886 205 CDD RPA1_DBD_C 6 154 IPR013955 -
Gma10g00886 205 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 10 102 - -
Gma10g00886 205 PANTHER REPLICATION FACTOR A 1, RFA1 10 102 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma10g00886 205 Gene3D - 2 146 IPR012340 -
Gma10g00886 205 Pfam Replication factor-A C terminal domain 11 124 IPR013955 -
Gma10g00886 205 SUPERFAMILY Nucleic acid-binding proteins 6 130 IPR012340 -
Gma10g00886 205 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00886 Gma-Chr10 14204249 14207374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00886 1 101 Core DNA Replication Machinery Family AT5G61000 32.381 4.00e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00886 - - gmx:102666680 374.785