Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00884 ATGGCAGACCCTTACTCCAATTTCTTCTCACCACTAGGTAGTAATTTCTTCCACTACCCTTCTCCAAGCCCTTCATCCCAGCACCACCATCCCTATGCCCACAACTTCCTCAACCAAAATGGTTCCAACATCATCAATAACAACCACAACACCTTTTTCCACTTCCACAATTTTCAAACCACTATTTGTTCTTCTTTTTCTTCTTCTTCTTCGCCCCCTTCCCCTCCCTTGAGAGTAGCCCTTCCTCTTCTAACCCTCAGCCCAAAAAATGAAGAGGAACAAGAAGAGGATGATGACCAAGAACAAGATCAGGATCACGAGATTCTTCAGGACAATTTTTGCACAGCCATGGATGTGGAAGAGAACTACAATAACAACAGAACCCTTCTTCATCACCTTCACCCCAAAGAGGAGGAACAAGATCAAGAAGATGGTCCTGATGAAACTGTCACTGTTGCACTTCACATTGGGTTGCCAAGCCCTAGTGCTGCTGAGATCGCTTCTGTGCTTTCTTCAGCTTGTtccacagaccaagaacaacaacaacaacaacaacaacaagatggtaataataataataatgggagtgatgatTTTTCTTCTTCAGGGTTCTTGTCTAACAGACTCAACAAGGGACAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGACTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCCGTGAGAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAGGAAGAGCCTGCATCTGAAGTAGAACAGGATCGATAA 1161 0.4298 MADPYSNFFSPLGSNFFHYPSPSPSSQHHHPYAHNFLNQNGSNIINNNHNTFFHFHNFQTTICSSFSSSSSPPSPPLRVALPLLTLSPKNEEEQEEDDDQEQDQDHEILQDNFCTAMDVEENYNNNRTLLHHLHPKEEEQDQEDGPDETVTVALHIGLPSPSAAEIASVLSSACSTDQEQQQQQQQQDGNNNNNGSDDFSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00884 386 Gene3D Classic Zinc Finger 228 251 - -
Gma10g00884 386 SUPERFAMILY beta-beta-alpha zinc fingers 295 333 IPR036236 -
Gma10g00884 386 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 40 385 - -
Gma10g00884 386 SMART c2h2final6 229 251 IPR013087 -
Gma10g00884 386 SMART c2h2final6 313 333 IPR013087 -
Gma10g00884 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 333 IPR013087 -
Gma10g00884 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Gma10g00884 386 PANTHER ZINC FINGER PROTEIN WIP2 40 385 IPR043584 GO:0003700|GO:0010468
Gma10g00884 386 MobiDBLite consensus disorder prediction 171 203 - -
Gma10g00884 386 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Gma10g00884 386 Gene3D Classic Zinc Finger 291 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00884 Gma-Chr10 14077096 14079561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00884 1 384 C2H2 Transcription Factor Family AT3G57670 59.204 1.26e-141 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00884 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00884 - - gmx:100776343 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00884 10 14077096 14079561 Gma10g00884 10 14077096 14079561 ECH
Gma10g00884 10 14077096 14079561 Gma13g03043 13 44817029 44819284 ECH
Gma10g00884 10 14077096 14079561 Gma15g00318 15 2744930 2747071 ECH