Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00877 GGCTGCGAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTTTGCAAATGGTTGACTCAGTTATTACTGGCTGTGGACTACCTTCACTCCAATCGGGTACTCCATAGAGATATCAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGACTTGCAAAGCTTCTTAATACTGAAGACCTTACTTCCCCGGCTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCGTTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCGACGGCATCTGAATTATTAAAGAATCCTCATTTACAACCATATGTTCTACGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAATAGTAACTCAAAGGATAAAACAAAAAACAAATCTAGCGGTAGCAAAGACCATTGGGACAAGGAGGCAGAATTGGCGGGATTAGTAAATCGTTTGGATCAACTTTATCCATTAGAGGGAAATGGAGATGTACAGATACGAAACTGGCATAATGATGGCAAGCTAGCAGTGTCAACCATTACAGAAGACAACCTTGAGACTAAAATGGTTGATTTGACCAGCTATACTGCAGAGTTTTCTACTAGTATTAGTGGCTCAAAAGATGGATCAACAACATCTGAATCAACTGTTTATAGTGTGTGCAAGGAAGGAGACTTTAAAAATAGACTTACAAGGGACTCGGCTGACTGTGAGATCACTTCAAAGAGTACAATGGATTCTGTGCATGAAGATCAAGGACTTGATGGTCATAAGTCATACGCAATTGACATAAATATGGTGATTAATAAAGTTGAAGATACTTTATCCAATGAAGATTTCAATACAGATGAAGCACTTAGTGAAGagactacagaagttgaagataaactttccaaagaaggctttgatagagctgtaacacaagagaaagatgataaacctgaggactccaataactcattgtctagtgaagacagcaacagcaacgataaagatgggtccattgatgagGAAAGGTCATCACCAATTGCACATGCTGTTAAGGTTGAGCATGACACTGACACTGGAAACAGGTTGAAGGAAAATAAAAACCCTGAAGCATTTACGGAAGGCTCACACATGGACAGCTTGGCTTGTGAGAGTAATGAAACGCGTCCGGGTAAGGATGAAGGACAAGCAGATACACGCACAATCAGTTGTTCAATGCATAAAGAAGTTGATAATGCTGTCATGGCTGATAAGACACCAAATGGCGTTCCATCAAGGACACACATATCAAGAGGTGGTGATAATACTTGCCATCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAGTTATGCGCACAGTTACTTCAGCAAGGACAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTTGGAACAAGGCAAAGAAGGACAAGACTGAGGCACCAACCAAGGAGCCGACAGCGGCCGCGGCTGAGGCACCGCTGCTAGGGCCAGGGGCGGGCGCAGGGACCTCTGTGGCAGCCAGTGCTGCACTCATGGAGGCGGCAGCGATGAGAACGGCACAGGTCTGA 1780 0.3961 AANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDIKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPAVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLKNPHLQPYVLRCRNASSIFLPVHLINSNSKDKTKNKSSGSKDHWDKEAELAGLVNRLDQLYPLEGNGDVQIRNWHNDGKLAVSTITEDNLETKMVDLTSYTAEFSTSISGSKDGSTTSESTVYSVCKEGDFKNRLTRDSADCEITSKSTMDSVHEDQGLDGHKSYAIDINMVINKVEDTLSNEDFNTDEALSEETTEVEDKLSKEGFDRAVTQEKDDKPEDSNNSLSSEDSNSNDKDGSIDEERSSPIAHAVKVEHDTDTGNRLKENKNPEAFTEGSHMDSLACESNETRPGKDEGQADTRTISCSMHKEVDNAVMADKTPNGVPSRTHISRGGDNTCHQRADALESLLELCAQLLQQGQLEELAAVLRPFGEDAWNKAKKDKTEAPTKEPTAAAAEAPLLGPGAGAGTSVAASAALMEAAAMRTAQV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00877 592 MobiDBLite consensus disorder prediction 348 463 - -
Gma10g00877 592 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 358 - -
Gma10g00877 592 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 409 542 - -
Gma10g00877 592 MobiDBLite consensus disorder prediction 360 388 - -
Gma10g00877 592 Pfam Protein kinase domain 8 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00877 592 Gene3D Transferase(Phosphotransferase) domain 1 2 219 - -
Gma10g00877 592 MobiDBLite consensus disorder prediction 542 565 - -
Gma10g00877 592 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 1 358 - -
Gma10g00877 592 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 409 542 - -
Gma10g00877 592 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00877 592 MobiDBLite consensus disorder prediction 398 437 - -
Gma10g00877 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 36 48 IPR008271 GO:0004672|GO:0006468
Gma10g00877 592 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00877 592 SUPERFAMILY Protein kinase-like (PK-like) 7 186 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00877 Gma-Chr10 13860186 13871853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00877 17 170 MAP Kinase Kinase Kinase AT4G08500 34.395 1.39e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma10g00877 Pkinase 9.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00877 K08857 - gmx:100818558 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00877 10 13860186 13871853 Gma10g00877 10 13860186 13871853 ECH