Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00872 ATGCGGGTGTTGATCATCATCGTTGTCATGGTGGATCCATGGTTTTCGTTGCCGCGCACCACGCTGCTTCCTCCATGCCAAGATTTGAAGATGGAGGGTTTTTCCTCTACTTCCTCCATGTCGAGATCTGAAGATGAAGGGCCTTCCTTCGTGTGGATACTAGATGGGCGATGGGGAGAAGGGGTGGGGTGGGTGGGAGGATGGCGCAACACAAAGGGGACGAGCATAATCTATAACCCATTGATTCAAAAAAACGTGTCAAACTTGAGCGATGTCACTAAGAAGACCAACGGTCGGCAAAAGATCAAGATGAAGAAGATCAGCAACAAGTGTAACCTTCAGGTGATGTTCTTAAAGTGTCAGACTGGAGTTTTCAAGAAAACGAGTGAGCTTGCAACCCTTTGTGGTGTCGACCTTGCTGTGATTATGTTCTCTCCCAATAACCAAGTTTACTCCTTCAGTAGCCCTAATGTGGATTTCGTCATCCACACTATACAACCCAAAGCCCACCTCCCTTCTTTACCCAAGACCTCAACAAGGACCCTAGCATCGTGGATGAGGATGAGCTCCACACACACCTCAACTGTTTGTCTGACCAAATTGCCGTAG 609 0.4795 MRVLIIIVVMVDPWFSLPRTTLLPPCQDLKMEGFSSTSSMSRSEDEGPSFVWILDGRWGEGVGWVGGWRNTKGTSIIYNPLIQKNVSNLSDVTKKTNGRQKIKMKKISNKCNLQVMFLKCQTGVFKKTSELATLCGVDLAVIMFSPNNQVYSFSSPNVDFVIHTIQPKAHLPSLPKTSTRTLASWMRMSSTHTSTVCLTKLP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00872 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 106 153 IPR002100 GO:0003677|GO:0046983
Gma10g00872 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 97 171 - -
Gma10g00872 202 SMART madsneu2 97 156 IPR002100 GO:0003677|GO:0046983
Gma10g00872 202 PANTHER MADS BOX PROTEIN 97 171 - -
Gma10g00872 202 SUPERFAMILY SRF-like 98 169 IPR036879 GO:0003677|GO:0046983
Gma10g00872 202 ProSiteProfiles MADS-box domain profile. 97 157 IPR002100 GO:0003677|GO:0046983
Gma10g00872 202 PRINTS MADS domain signature 99 119 IPR002100 GO:0003677|GO:0046983
Gma10g00872 202 PRINTS MADS domain signature 119 134 IPR002100 GO:0003677|GO:0046983
Gma10g00872 202 PRINTS MADS domain signature 134 155 IPR002100 GO:0003677|GO:0046983
Gma10g00872 202 Gene3D - 109 174 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00872 Gma-Chr10 13775856 13777274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00872 92 162 Type I MADS-box Gene Family AT5G60440 56.338 1.55e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma10g00872 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00872 - - gmx:100808929 110.538