Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00863 ATGGAGCAAACCACTCTCGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCCTCATGGCTGCTCCGGCGCCGGAAACCGTCAATTCCTTCAAGGCGTTGCTCGAGCTTCCGTCGACGCAGGCCGTCGAGCTCCTCCACTCGCCTGAGCGCGCCAGAAAACCGCTGCGCCACAGTCCGAAACCTCCAACGCCACCGCCACCGCATCCGCCAACCTCACCTTCCTTCACCGCCTCCGCATCCGCCGCCACCGCCAACCTCACCTTCCCCTCCAACGCCGCACTGATCGAACGCGCCGCCAGGTTCTCCGTCTTCGCCGGCCAGAACTCCAACTCGAACTCGAACTCGCCGGAGGTGAAGCGCGAGCTGCCGGAGACCGATTCCAACCCGAGCTCCACTCACGGCGGCGGAGGCGGCGGCTCCGTCTCCGATCTCGCCATGGAGAACAAGAATCCGAAGACCGCGAAGCGGAAGGAGCGAGAGAAGAAGGTTAAAGCATCATCGAGGAAGAGCAAGAGCGTCGCCGCCGCCACCGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACGGCATTGGTTCTAGATAAAATCATCAACCATGTGCAATCTCTACAGAATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAGTAATTGATTTCAACCTCGACAGCTTACTGGCTACCGAAGGAGTGACTCCAATGGACTGTAACTTCCCTCCGACAGTTGCACCTGTCATGTGGCCAGAAATCCCACAGAACGGAAACAGACAACAATATCAGCAACCGTGGCAGTTTGATGCATTCCACCAACCCCTTTGGGGGAGGGAAGAAGACAACACTAACATGACTCCAGAAAACTCACTCTGGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1074 0.5512 MEQTTLEAIQFNEEIQGLMAAPAPETVNSFKALLELPSTQAVELLHSPERARKPLRHSPKPPTPPPPHPPTSPSFTASASAATANLTFPSNAALIERAARFSVFAGQNSNSNSNSPEVKRELPETDSNPSSTHGGGGGGSVSDLAMENKNPKTAKRKEREKKVKASSRKSKSVAAATDESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQNEVEILSMKLAAVNPVIDFNLDSLLATEGVTPMDCNFPPTVAPVMWPEIPQNGNRQQYQQPWQFDAFHQPLWGREEDNTNMTPENSLWSYDSSANSVSLHSNQLKMEL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00863 357 Coils Coil 238 258 - -
Gma10g00863 357 Pfam Helix-loop-helix DNA-binding domain 202 249 IPR011598 GO:0046983
Gma10g00863 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 248 IPR011598 GO:0046983
Gma10g00863 357 MobiDBLite consensus disorder prediction 58 73 - -
Gma10g00863 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 357 IPR024097 GO:0006355
Gma10g00863 357 MobiDBLite consensus disorder prediction 106 185 - -
Gma10g00863 357 MobiDBLite consensus disorder prediction 43 80 - -
Gma10g00863 357 CDD bHLH_AtBPE_like 188 273 - -
Gma10g00863 357 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 357 - -
Gma10g00863 357 Gene3D - 195 266 IPR036638 GO:0046983
Gma10g00863 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 267 IPR036638 GO:0046983
Gma10g00863 357 SMART finulus 204 254 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00863 Gma-Chr10 13663304 13669052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00863 2 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 46.373 1.55e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g00863 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00863 - - gmx:100810862 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00863 10 13663304 13669052 Gma10g00863 10 13663304 13669052 ECH