Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00858 ATGGATTCCCATATCCATCATCATCATCATCAGGGTTACCAACAACATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCAAGTTCTCTTCTTTCAAATCTCACTCCTTTTGTGAGTGAAGACTTTGGTTCTAGCAGCTTCAGAGAGTTGCAAGGAAACAACAACAAGGGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGAGTGTATGGTGGGGGGTTGCCACCTCACTATCCAAGGCATCGTGGTTCTTCTTCCTCTGCTGCTACTTCGAGTTCTGCTATGGAAGGGTCTTTTGGATTGGTGGGTTCAATGGGAATGAATCATGAAACGCCGCAAAACGGGCTTGGGTCAAGTCTTCTCAGGCATAGTACTTCCCCTGCTGGCCTTTTCTCCAACAATAACATTAACTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCAGTAATGGTGAACTTAGTCCATGCATTAACGGATTGAAGAATCAGGTTAGCTTCTCACCAAGAAATGCTTCTTCGCTCGGAATGTTGTCGCAGATCTCCGAAATAGGGAATGAAGACATTGAGGCAACTAGTCCTGATGATGATACAAGGCATGAAGGTAATGATACTCAACAATATGGCCCTGGATTCCCCTATGGTTCTTGGAATGATACTCCACAACTCTCAGAAAATCTCAGTGGCTTGAAAAGAGGAAGAAGTAGCAATGAAAAGATGTTTTCTGATGAAATTCAGAATGGAGAGCTAGGAAACCAAGTTAATATGTTATCACACCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACTATGAAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAACGGGCAAAATGCGAGTGTACAAGCATGCAAAAGGCAGATACAAATCAAATTGCTTGA 1155 0.4286 MDSHIHHHHHQGYQQHQNQPSSGLLRFRSAPSSLLSNLTPFVSEDFGSSSFRELQGNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHRGSSSSAATSSSAMEGSFGLVGSMGMNHETPQNGLGSSLLRHSTSPAGLFSNNNINFQNGFATMKGVGNYGGVNGSNGELSPCINGLKNQVSFSPRNASSLGMLSQISEIGNEDIEATSPDDDTRHEGNDTQQYGPGFPYGSWNDTPQLSENLSGLKRGRSSNEKMFSDEIQNGELGNQVNMLSHHLSLPKTSAEMITMKKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRAKCECTSMQKADTNQIA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00858 384 MobiDBLite consensus disorder prediction 1 25 - -
Gma10g00858 384 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
Gma10g00858 384 PANTHER TRANSCRIPTION FACTOR BHLH130 15 376 - -
Gma10g00858 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 376 - -
Gma10g00858 384 Coils Coil 353 373 - -
Gma10g00858 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Gma10g00858 384 MobiDBLite consensus disorder prediction 202 234 - -
Gma10g00858 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 372 IPR036638 GO:0046983
Gma10g00858 384 Gene3D - 307 380 IPR036638 GO:0046983
Gma10g00858 384 MobiDBLite consensus disorder prediction 77 99 - -
Gma10g00858 384 SMART finulus 312 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00858 Gma-Chr10 13400181 13403280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00858 18 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.215 6.13e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g00858 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00858 - - gmx:100810203 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00858 10 13400181 13403280 Gma10g00858 10 13400181 13403280 ECH
Gma10g00858 10 13400181 13403280 Gma11g01191 11 10138137 10142740 ECH
Gma10g00858 10 13400181 13403280 Gma12g00492 12 4087312 4092196 ECH
Gma10g00858 10 13400181 13403280 Gma13g03052 13 44886022 44889226 ECH
Gma10g00858 10 13400181 13403280 Gma15g00309 15 2686442 2689889 ECH