Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00787 ATGGAGGTTCCAGAAATGGAAGGCAAGACCGAAAGTCATGTGACATCGGCAGAAGCCTTTGTGGAAGGGGGGGTTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGATCCTGCCACTGTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATCAGCTTGAGGGATACTACAAGTCAAGAACTGCTTGAGGCAGTAGAGCTGGAAAGGAGCTTGAGGGATACCCCATCTAGAAATGCTGCGATTTTTCATCATCCAGCACTTGGTGATTTTGAATTGCAGCATTTACCCATGGCTATGAATGAGGCTGATATTGAAGAGCGAATAATTCAACATTTGACTGCTGCAGCAGCAATGAGGAGATCACACCACCTCGGCCAGAGGGAAGGCCATCGAACTAGGTCATCTGCTCATGGCCGTCCACACTTCTTAGTATACTCAACTCAGCCAAGTGCACCACCATTTGCTGCAGGAGGGGAAAGTGAACCAGCTGCAATTCCTGTAGGAATTCCATCTACCCCACTTACATTTGACGGAAATGAGCAATCATCTCCACAGCAGATCCCCTATTTCCAAACTCGGGGTTCTTCTTTAACTTCTGGCTCTACTGTCGCAACAACAAATCTTCAAGGAGTTCACTCTAATGATAGGTTTGCCTCTCATTCTTTTCCTGCAAGCCAAGACAGAGCACAGCCATCAGAACAATCGTTCTCTGATTCTCTGCGTTCCAGATTTAATGCAGTATCCACGAGATACAAAGAATCAATTTCGAAGGGCACAAGGGGATGGAAAGAGAGGCTGTTCTCTCCCAATTCTTCTATGTCAGAACTTGGTTCAGAAGTTAAGAGAGAATTGAATGCCAAAATTGCTAGCGTGTCCCGATTGATGGAGCGCCTTGAAACAACAAGAGAAAATAATAGGGCTGCAGGAACTTCTTTATCAAATCCAAATCATTTGGTGAACTGTTCCATTGCAGAGACAAGCAACCAAAACAATGTGGAAGCTCGTGGAGAGAACTCTTTGCGTGACAATAGTACTCCAACTACATTTTCTGCTAGCTCAGATTCAAAATGA 1149 0.4508 MEVPEMEGKTESHVTSAEAFVEGGVQEACDDACSICLEDFCKSDPATVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLRDTTSQELLEAVELERSLRDTPSRNAAIFHHPALGDFELQHLPMAMNEADIEERIIQHLTAAAAMRRSHHLGQREGHRTRSSAHGRPHFLVYSTQPSAPPFAAGGESEPAAIPVGIPSTPLTFDGNEQSSPQQIPYFQTRGSSLTSGSTVATTNLQGVHSNDRFASHSFPASQDRAQPSEQSFSDSLRSRFNAVSTRYKESISKGTRGWKERLFSPNSSMSELGSEVKRELNAKIASVSRLMERLETTRENNRAAGTSLSNPNHLVNCSIAETSNQNNVEARGENSLRDNSTPTTFSASSDSK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00787 382 MobiDBLite consensus disorder prediction 349 382 - -
Gma10g00787 382 MobiDBLite consensus disorder prediction 241 267 - -
Gma10g00787 382 SMART ring_2 33 73 IPR001841 -
Gma10g00787 382 Coils Coil 307 327 - -
Gma10g00787 382 SUPERFAMILY RING/U-box 26 80 - -
Gma10g00787 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 90 IPR013083 -
Gma10g00787 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 381 - -
Gma10g00787 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 381 - -
Gma10g00787 382 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Gma10g00787 382 MobiDBLite consensus disorder prediction 176 228 - -
Gma10g00787 382 MobiDBLite consensus disorder prediction 146 165 - -
Gma10g00787 382 Pfam Ring finger domain 32 73 IPR001841 -
Gma10g00787 382 MobiDBLite consensus disorder prediction 200 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00787 Gma-Chr10 10613856 10617269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00787 30 81 C3H Transcription Factor Family AT4G00335 46.154 5.86e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00787 K19043 - gmx:100802025 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00787 10 10613856 10617269 Gma10g00787 10 10613856 10617269 ECH
Gma10g00787 10 10613856 10617269 Gma02g01814 02 42067306 42071654 GST
Gma19g01919 19 48401763 48409064 Gma10g00787 10 10613856 10617269 PCT
Gma03g01879 03 44755188 44760420 Gma10g00787 10 10613856 10617269 PCT
Gma10g00787 10 10613856 10617269 Gma19g01919 19 48401763 48409064 PCT
Gma10g00787 10 10613856 10617269 Gma03g01879 03 44755188 44760420 PCT