Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00770 atggatacaaaaagcgtgccaagcttgaatgatggcaacgtgaagaagaccaaaggtcgacaaaaaatcgaaatgaagaagataagcaatgagcgttaccttcaggcgactttctcgaagcgccgcaccggaattttcaagaaagcaagtgagcttgccaccctctgcgacgtggaccttgctgtgatcgtcttctcccccggtaatcgagttttctccttcggcagtccccatgttgattccgttatccaacgctatatagctcatgccccaactcctcccaccctcgaccttaatgaacccttctgcaccatggatgagcgtgggctccacgcgcacctcgactacctggcgaatcggttcaccagggagaagaagcgcgaagaggatttgaatcgtttgttggaggtttcaaagaatcacttttggtggacctcaccgattgaaagcatgaacaaggcccaagtcgagaactataagaaggccttggaggacctaaagacacttgtcaataaaaaacGTGGAAGCTCCTCTTCCCATGTTAATAGCGCTGTGCCTATGCAAAATCCTATGGGTGTGATTGATGGGACAATCTTGTGTTACCGTCAATTTAATGACATTCAAAGAAATGGACCTACTCCTGGGTTATTTTGA 654 0.0856 MDTKSVPSLNDGNVKKTKGRQKIEMKKISNERYLQATFSKRRTGIFKKASELATLCDVDLAVIVFSPGNRVFSFGSPHVDSVIQRYIAHAPTPPTLDLNEPFCTMDERGLHAHLDYLANRFTREKKREEDLNRLLEVSKNHFWWTSPIESMNKAQVENYKKALEDLKTLVNKKRGSSSSHVNSAVPMQNPMGVIDGTILCYRQFNDIQRNGPTPGLF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00770 217 PANTHER MADS BOX PROTEIN 18 173 - -
Gma10g00770 217 SUPERFAMILY SRF-like 19 100 IPR036879 GO:0003677|GO:0046983
Gma10g00770 217 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Gma10g00770 217 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Gma10g00770 217 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Gma10g00770 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Gma10g00770 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 18 173 - -
Gma10g00770 217 MobiDBLite consensus disorder prediction 1 21 - -
Gma10g00770 217 Gene3D - 30 93 IPR036879 GO:0003677|GO:0046983
Gma10g00770 217 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Gma10g00770 217 CDD MADS_MEF2_like 19 86 IPR033896 GO:0000977|GO:0045944
Gma10g00770 217 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00770 Gma-Chr10 10301654 10302371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00770 14 170 Type I MADS-box Gene Family AT5G60440 48.148 1.04e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma10g00770 SRF-TF 5.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00770 - - gsj:114369590 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00770 10 10301654 10302371 Gma02g01838 02 42477793 42478302 GST