LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g00769	ATGAACAACACAACCGATTCCGGATTCCTCGGCTCCAACAACACAAGTGGCTTTGGCATGGGGATAGGAATCTCAATTGGGATTCTTCTCCTCATCACAACCATCACACTCACCTCCTACTTCTGCACAAGATCACAAGTGCCAACTCCTCCAAGGAGAAGAACAACAAGTAATTCCAACCCACAATTCCTTGAGCCACACCACACAATAGTTGATGTTGGCCTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTCTACTCTGAAGCCAAACTAAGGAAATTTGATTCCACTTCAACAAGCTGCTCCATATGTCTTGGAGATTACAAAGGTTCTGATTTGCTAAGGGTGTTGCCTGATTGTGACCATGTCTTCCACCTTAAGTGCATTGACCCTTGGTTGAGGCTGCATCCAACATGTCCTCTCTGCAGAACATCTCCAATTCCAACACCTCTGTCAACTCCTCTGGCTGAAGTGGTCCCTTTAGCAACCAGGCGAGATTAA	507	0.4615	MNNTTDSGFLGSNNTSGFGMGIGISIGILLLITTITLTSYFCTRSQVPTPPRRRTTSNSNPQFLEPHHTIVDVGLDEATIMNYPKMLYSEAKLRKFDSTSTSCSICLGDYKGSDLLRVLPDCDHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g00769	168	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	64	149	IPR013083	-
	Gma10g00769	168	SMART	ring_2	103	144	IPR001841	-
	Gma10g00769	168	Pfam	Ring finger domain	102	145	IPR001841	-
	Gma10g00769	168	ProSiteProfiles	Zinc finger RING-type profile.	103	145	IPR001841	-
	Gma10g00769	168	PANTHER	RING-H2 FINGER PROTEIN ATL70-LIKE	3	166	-	-
	Gma10g00769	168	PANTHER	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	3	166	IPR045899	-
	Gma10g00769	168	CDD	RING-H2_PA-TM-RING	103	145	-	-
	Gma10g00769	168	SUPERFAMILY	RING/U-box	102	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g00769	Gma-Chr10	10254996	10255951	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma10g00769	7	165	C3H Transcription Factor Family	AT2G35910	61.875	2.91e-55	172

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g00769	-		-	gmx:100796149	311.612

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma10g00769	10	10254996	10255951	Gma02g01839	02	42490312	42490843	GST