Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00766 ATGGCGATGCAAACCGTTTACCTGAAAGAACATGAAGGACTTGTCTACAATTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAACCAGTTTATGGGGAGTATTGTGGTCAAATCAAACCCTTTTCGTTGGAGATTTCCAACTACGTCGACCAATTCCCAGCCGGTAAGCAAGCGGTACGAGGAGTTGAACAATTGTTGGATAAAGGACATACAACAACCCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCAGAAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCAATGATCTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTTTGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGACGGACCAACTTACGTAAATGCGAAGCAGTACCATGGAATCATCAGACGTCGGCTATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATTAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCATTGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAGGCTCTACTAATGGAAATGGTAGAAATGAAAGCAAAGTGAATAAAACTGGCGGCCGACAATTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCATTCTGAGGTTGGAACTTTAAATTCCTCAAAGGAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGTTTTTCTGTCAATCGTCTTGGATCTTCCGTTCACTCCCTA 906 0.4371 MAMQTVYLKEHEGLVYNSVGQLSSVTSAPWWSALGSQPVYGEYCGQIKPFSLEISNYVDQFPAGKQAVRGVEQLLDKGHTTTQFTIFPDDCKMSGDAENPQATLSLQSSLAEPHNRFEIGFNQPMICAKYPYMDQFYGLFSAFGPQISGRIMLPINLTSDDGPTYVNAKQYHGIIRRRLSRAKAVLENKMIKRRKPYMHESRHLHALRRPRGCGGRFLNTKGSTNGNGRNESKVNKTGGRQLQSSASQSSEVLHSEVGTLNSSKETNRSSPNISGSEVTSMYSREGFDGFSVNRLGSSVHSL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00766 302 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Gma10g00766 302 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 302 IPR001289 GO:0003700|GO:0006355
Gma10g00766 302 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Gma10g00766 302 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Gma10g00766 302 Gene3D - 160 222 - -
Gma10g00766 302 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Gma10g00766 302 MobiDBLite consensus disorder prediction 208 278 - -
Gma10g00766 302 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Gma10g00766 302 MobiDBLite consensus disorder prediction 218 278 - -
Gma10g00766 302 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00766 Gma-Chr10 10198351 10202091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00766 1 281 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.932 9.25e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma10g00766 CBFB_NFYA 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00766 K08064 - gmx:100794755 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00766 10 10198351 10202091 Gma02g01842 02 42569918 42575404 GST
Gma19g01911 19 48289575 48293923 Gma10g00766 10 10198351 10202091 PCT
Gma03g01867 03 44644896 44649803 Gma10g00766 10 10198351 10202091 PCT
Gma10g00766 10 10198351 10202091 Gma19g01911 19 48289575 48293923 PCT
Gma10g00766 10 10198351 10202091 Gma03g01867 03 44644896 44649803 PCT