Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00758 ATGGACGAGATCGACGTGCCTCCTTTCTTCGTATGCCCTATCTCATTAGAGCTCATGAAGGACCCCGTTACGGTCTCCACCGGCATCACCTACGACCGCCACAGCATCGAGAAGTGGCTCTTCGCCGCCGTGCCGAAGAACAACACGTGTCCCGTCACGAAGCAGCCCCTCCTCCCGGACCTCACTCCCAACCACACGCTCCGCAGGCTCATCCAAGCCTGGTGCACCGTCAACGCTTCTCACGGCGTCCAGAGAATCCCCACGCCAAAACCTCCCGTCGACAAAACCCTCATCGAGAAGCTCCTCCGCGACGCCTCGGCTTCCGATTCCCCGAGCCTCCAGCTCCGGTCCCTCCGAACCCTCAAGTCCATCGCCTCGGAATCCCAATCAAACAAACGCTGCATCGAATCCGCCAAAGACGCAGTTAGTTTCTTAGCATCATTTATAACCACCACTGTCACCGTCACCACTACCACCGTACTCCTCGATGACGTCGAGTTGGAAATAAAAACAAGTATAGCCCACGAAGCATTGAGCCTTTTACACAGCATTCAGCTGTCAGAATCCGGTTTAAAGGCTCTGATGAACCATCCAGAGTTTATAAACTCTCTAACCAAAATCATGCAGAGTGGAATCTACGAGTCACGCGCCTACGCGGTTTTCTTGCTGAATTCCTTATCCGAAGTGGCGGATCCGGCGCTGTTGGTTAACCTAAAAATTGATTTGTTCACTGAACTGGTTCAAGTTCTTAAGGATCAGGTTTCGGAGAAGGCCTCGAAGGCGACGCTGAGAGCATTGATCCAGGTGTGTCCGTGGGGGAGGAATAGGGTGAAGGCGGTGGAGGCCGGAGCAGTGCCGGTTCTGGTGGAGCTTCTTCTCGAATGCAAGGAGAGAAAACCAATTGAAATGATGCTTGTTTTGTTGGAGATTTTATGTCAGAGTGCTGATGGAAGGGCTGGTTTGTTGGCCCACGCGGCGGGGGTGGCGATAGTGGCGAAGAAGATTCTGAGGGTGTCCACGATGGCCAACGATAGGGCGGCGAAGATTCTGCTTTCGGTGTGCAGATTCTCTGCCACCCACGGCGTGGTGCAGGAGATGCTGCAGCTTGGGGTGGTGGCGAAGATGTGTTTGGTGCTGCAAGTGGATAGTGGGAACAAAGCGAAAGAGAAGGCTAGGGAGATTCTGAAATTGCATGCTAGGGCTTGGAGGAACTCGCCTTGCATACCTCACAATTTGCTTGCTTCGTTTCCAATGAGTTCCTGA 1263 0.5352 MDEIDVPPFFVCPISLELMKDPVTVSTGITYDRHSIEKWLFAAVPKNNTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKTLIEKLLRDASASDSPSLQLRSLRTLKSIASESQSNKRCIESAKDAVSFLASFITTTVTVTTTTVLLDDVELEIKTSIAHEALSLLHSIQLSESGLKALMNHPEFINSLTKIMQSGIYESRAYAVFLLNSLSEVADPALLVNLKIDLFTELVQVLKDQVSEKASKATLRALIQVCPWGRNRVKAVEAGAVPVLVELLLECKERKPIEMMLVLLEILCQSADGRAGLLAHAAGVAIVAKKILRVSTMANDRAAKILLSVCRFSATHGVVQEMLQLGVVAKMCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPHNLLASFPMSS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00758 420 CDD RING-Ubox_PUB 10 55 IPR045210 -
Gma10g00758 420 SUPERFAMILY ARM repeat 90 325 IPR016024 -
Gma10g00758 420 Gene3D - 87 405 IPR011989 -
Gma10g00758 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Gma10g00758 420 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gma10g00758 420 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gma10g00758 420 SUPERFAMILY RING/U-box 3 81 - -
Gma10g00758 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 418 - -
Gma10g00758 420 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Gma10g00758 420 PANTHER WDSAM1 PROTEIN 1 418 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00758 Gma-Chr10 10017763 10019615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00758 2 417 U-box Gene Family AT2G35930 54.374 1.92e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00758 - - gmx:100785598 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00758 10 10017763 10019615 Gma10g00758 10 10017763 10019615 ECH
Gma10g00758 10 10017763 10019615 Gma02g01851 02 42735299 42737024 GST
Gma10g00758 10 10017763 10019615 Gma19g01904 19 48231923 48233182 PCT
Gma10g00758 10 10017763 10019615 Gma03g01863 03 44594085 44595852 PCT