Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00721 ATGTCCAGCGCCGCCGGAGCTCCCGATCGCCGCGCCTCTCCGCCGCGGGTGGCTGCCGGCGCCCCCACCCGCCCGCCGCTCAAGCGCCACCTCGCCTTCATCACGAAACCGCCCTTCGCCCCGCCTGACGAGTACCACAGCTTCTCCAGTATTGGCTCCCGCCGCGCCGCCGATGAAGCCGTCGTCGTTAGATCTCCGTACATCATGAAGCGGAAGAGTGGAATGAATGACAGTGAAGGGGAGTCACTAGCACAAAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGCAATGTAACAAATAATAGTCCCTTTAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACACAGAAGGCAAAGGCTTCCAAAGGCAGATCATGTCCTCCGACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAACATGCAGAGGGTGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGAATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTGCTACATCTGGTGATGTGGATGGTGATATCTCTTTGCTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGAATAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAATTTGAGTGAAAATGAAAACAACCAGAAGTGCCTTTTTGTGACTGAAGAAGATATTAAGGACCTACCTTGCTTCCAGCAGAATGAAACTCTAATAGCAATTAAAGCTCCGCATGGAACCACCCTGGAAGTCCCCGATCCTGAGGAAGCTGTAGACTATCCACAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTATCAGTCAATTTGAAGAGAAATTTGAAGAAGTTAATGGTGCTGAGCTCCCAATGATCCCACTTGCTTCCAGTTCTGGTTCCAATGAGCAACTAATGACAGAAATTGTTACTGCTGAATGCAGCGGAAAAGAACTTGAACCTCAAACTCAGCTCTCTTCTCATGCATTCTCTGATGCTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGATGCAGACTATTGGCTTCTATCAGATGCTGACATTAGTATAACAGATATGTGGAGAACAGATTCTAGTGTCGATTGGAATGGTGTAGACATGCTTCATCCTGACTTTGGAGTCATTTCAAGGCCTCAAACTCCATCATCTGGGTTTGCTGAAGTGCCATCAACAGCAGCAAACTCTATTCAGAAGTGA 1404 0.4601 MSSAAGAPDRRASPPRVAAGAPTRPPLKRHLAFITKPPFAPPDEYHSFSSIGSRRAADEAVVVRSPYIMKRKSGMNDSEGESLAQKWSNSPGYTNVSNVTNNSPFKTPVSAKGGRTQKAKASKGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEGGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESATSGDVDGDISLLKAEVEKLSLEEQGIDDQIREMQERLRNLSENENNQKCLFVTEEDIKDLPCFQQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEVNGAELPMIPLASSSGSNEQLMTEIVTAECSGKELEPQTQLSSHAFSDASQEFAGGMMKIVPSDVDNDADYWLLSDADISITDMWRTDSSVDWNGVDMLHPDFGVISRPQTPSSGFAEVPSTAANSIQK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00721 467 MobiDBLite consensus disorder prediction 78 110 - -
Gma10g00721 467 PANTHER TRANSCRIPTION FACTOR E2F 25 455 IPR015633 GO:0000978|GO:0006357
Gma10g00721 467 MobiDBLite consensus disorder prediction 72 143 - -
Gma10g00721 467 CDD E2F_DD 226 331 IPR032198 GO:0046983
Gma10g00721 467 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Gma10g00721 467 Coils Coil 233 267 - -
Gma10g00721 467 Pfam E2F transcription factor CC-MB domain 229 330 IPR032198 GO:0046983
Gma10g00721 467 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
Gma10g00721 467 MobiDBLite consensus disorder prediction 127 143 - -
Gma10g00721 467 SUPERFAMILY E2F-DP heterodimerization region 226 331 IPR037241 -
Gma10g00721 467 Gene3D - 142 215 IPR036388 -
Gma10g00721 467 Gene3D - 220 331 - -
Gma10g00721 467 MobiDBLite consensus disorder prediction 1 27 - -
Gma10g00721 467 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Gma10g00721 467 PANTHER TRANSCRIPTION FACTOR E2FB 25 455 - -
Gma10g00721 467 MobiDBLite consensus disorder prediction 448 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00721 Gma-Chr10 8794201 8798557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00721 22 464 E2F-DP Transcription Factor Family AT2G36010 56.092 1.34e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma10g00721 E2F_CC-MB 8.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00721 K06620 - gmx:100809283 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00721 10 8794201 8798557 Gma10g00721 10 8794201 8798557 ECH
Gma10g00721 10 8794201 8798557 Gma02g01887 02 43777257 43782108 GST