Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00620 atggacttgcagttgaagcaatggagaaaccagcatgagtcagagCAAGAACAAGAACATTATTCCCCAAACATGGCAAAATTTCTATCTCAACAACAACACCCACCACCATTTCCCTCTGCACTCCCTCTCTTTGTACCTGAACAACCCAACACCAAAGTCAGCACCTTGTCAGCATTTTCTGATTCCACATTACCCTCTTCTCCCAGATTTCCCAGAATGGAGAGTTGCTTCAGCTTTGCACAATGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCTGGCCGGTGCTCCTGTTCCTCCTGAGCTCCTTCTACCAATCAAGAAAAGCTTCCTTCAACTTTATCACCCTCCTAATTGGTACTACTGGCGAAGAGAAGCACTGGATCCGGAGCCGGGGCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCGAAGGACACGGTGGCAGGTCAGAAGTACTGCGACCGCCACATGCACCGTGGCCGGAACCGTTCAAGAAAGCCTGTGGAACAACGTGAAGGATCTCTTTCTGCTATAGACTCTGTTTCTTCTTCACACTCTGCTTCATTCAATCTCCTTCACCTCGGTCAAAGTTCCGCTGTGGCCAAGAGTGACAGCAAGAGCTTGTCTAGAAACCGTGATCATGTGGATGGGGATGGCAAATCAAATGGCCATGTCTTGAGGCATTTCTTTGATGATTGGCCAAGGACACTGCAAGAGCCTGACAATGGTGAAAGCAATGGAAGCCAGAACAACAACTCAGGAAAATGTCTTTCTATGTCAACACCAGGAATCGATCCCTCGGATGTGTCGTTGAAATTGACCACTGGCTATGGAGAGGACGCGTGCCAGGCAGCTTCGGTGGGAGGACCACTTGCAGAGGCATTGAGATCATCCACCACCAGCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTAGTTCTGCTTGTGAGACCAGCTTCATTAGCACCTAA 999 0.4785 MDLQLKQWRNQHESEQEQEHYSPNMAKFLSQQQHPPPFPSALPLFVPEQPNTKVSTLSAFSDSTLPSSPRFPRMESCFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKKSFLQLYHPPNWYYWRREALDPEPGRCRRTDGKKWRCSKDTVAGQKYCDRHMHRGRNRSRKPVEQREGSLSAIDSVSSSHSASFNLLHLGQSSAVAKSDSKSLSRNRDHVDGDGKSNGHVLRHFFDDWPRTLQEPDNGESNGSQNNNSGKCLSMSTPGIDPSDVSLKLTTGYGEDACQAASVGGPLAEALRSSTTSSTSSPTSVLLQLPPSSACETSFIST 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00620 332 MobiDBLite consensus disorder prediction 21 35 - -
Gma10g00620 332 MobiDBLite consensus disorder prediction 1 20 - -
Gma10g00620 332 Pfam WRC 133 175 IPR014977 -
Gma10g00620 332 MobiDBLite consensus disorder prediction 206 269 - -
Gma10g00620 332 Pfam QLQ 78 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma10g00620 332 MobiDBLite consensus disorder prediction 212 244 - -
Gma10g00620 332 PANTHER GROWTH-REGULATING FACTOR 3 8 332 - -
Gma10g00620 332 PANTHER - 8 332 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma10g00620 332 MobiDBLite consensus disorder prediction 159 185 - -
Gma10g00620 332 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma10g00620 332 MobiDBLite consensus disorder prediction 1 41 - -
Gma10g00620 332 SMART QLQ_2 76 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma10g00620 332 MobiDBLite consensus disorder prediction 245 269 - -
Gma10g00620 332 ProSiteProfiles WRC domain profile. 132 176 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00620 Gma-Chr10 6723157 6726188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00620 1 323 GRF Transcription Factor Family AT3G52910 42.268 4.92e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma10g00620 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00620 - - gmx:100814300 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00620 10 6723157 6726188 Gma10g00620 10 6723157 6726188 ECH
Gma10g00620 10 6723157 6726188 Gma13g01311 13 27641471 27644196 GST
Gma19g01816 19 47452135 47455112 Gma10g00620 10 6723157 6726188 PCT
Gma03g01770 03 43802417 43805419 Gma10g00620 10 6723157 6726188 PCT
Gma10g00620 10 6723157 6726188 Gma19g01816 19 47452135 47455112 PCT
Gma10g00620 10 6723157 6726188 Gma03g01770 03 43802417 43805419 PCT