Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00616 ATGGAAATGGAAGATCATCAGCATCAGCACCACCATCATCACTTTGGCATGAACGATCTAAGGCAAGTGGTGAATAACGGGCCGAGGCCGGCCCATACCACCTTCCCCTCCATGCCGCCGCACCCCACGGAGGAGCTTTTCCCCGGCCACCACCACCGTAATCTCACTCCTTTACCTACTCATCATCCCCAACAACAACAGCACTTCGAGGTTATGATGTTTGGTCGAGACATAATGCCACCTGGCCTTCACGACTTTGCTTCCACACCCCATGATTCTGCTGTTGCTACCACCACCATCACCCTACCCACTCCACCGGTTACTTGCGGCTTTGATGCCGCTGAGGGTGCAGGTTGCATCGGTGGAGACCCCTTCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAATCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTGTGAAGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGGCATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAATAGTAACACAGTTTCAGTCCCAGAAACCAATGTTGTTGTTGGCAGCATTCATTTTCAAGGCCCTTCTCAAACAAATCAAGATAATAATAAGTTTCAATCTCACAACAACAACAACAACAGGCATTGTGATAGCCTCAGCCTCACTAACTCCACTAATTTTGACACATCAACATCTGAAGGTCATGATGGCAATGATCACAGTATGGAGAATGAGTCCATGGAGAAGAGGATAAAGAGGAAGAGTGGGAGGAGTTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAAATGAGGAAGCTGGTGGAGAAGCAAAAGGAGTGGTTGGATAAGCTTGTGAAGACACTTGAAGAGAAGGAGAAGGAGAGAATGCTAAGAGAGGAAGAATGGAGGAAGCAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTCTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTTTGATGGAGGCTTTGCATAAGTTAACTGGAAGAGAAATAATGAAGGTTGAAACTGATCCTGAGGGTACTATAAATGTAATGACTGCAGCTGAAGTTCAAAACCAGAATAACGAAGATGAGAGTGAAATTTTGAACAGCAGTAATGTTATCAGAGGTGCTGATAGCTGGCAAGAATCTGAGATCACAAGACTTGAACAGCTGAGAGCTGAGATGGAGACAAGGTTTCCATATAGTGAAATTTCAGAAGAGGTTTCATGGGATGTAGTAGCAACAAAGATGGCTGATTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAACAAGGAAGAGAAGAATAGCAAGAATCGCAAGGAAAACTTATCTAGAAACTGCTTTTACTTCAAGAACAATCATGAGGATCAACAACAATCTTCTCTATACGATCAAGGAAGTGCCTATTGTGATGATGATGTCAATGAGCAAGGGAAAGAGATTGAGAGGCTTCAAACAAATAATGGTTCTT 1645 0.4395 MEMEDHQHQHHHHHFGMNDLRQVVNNGPRPAHTTFPSMPPHPTEELFPGHHHRNLTPLPTHHPQQQQHFEVMMFGRDIMPPGLHDFASTPHDSAVATTTITLPTPPVTCGFDAAEGAGCIGGDPFTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSVPETNVVVGSIHFQGPSQTNQDNNKFQSHNNNNNRHCDSLSLTNSTNFDTSTSEGHDGNDHSMENESMEKRIKRKSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALHKLTGREIMKVETDPEGTINVMTAAEVQNQNNEDESEILNSSNVIRGADSWQESEITRLEQLRAEMETRFPYSEISEEVSWDVVATKMADFGYERSALMCKEKWESINKEEKNSKNRKENLSRNCFYFKNNHEDQQQSSLYDQGSAYCDDDVNEQGKEIERLQTNNGS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00616 548 MobiDBLite consensus disorder prediction 236 276 - -
Gma10g00616 548 MobiDBLite consensus disorder prediction 236 298 - -
Gma10g00616 548 CDD GT1 128 193 - -
Gma10g00616 548 SMART sant 125 188 IPR001005 -
Gma10g00616 548 SMART sant 427 490 IPR001005 -
Gma10g00616 548 Pfam Myb/SANT-like DNA-binding domain 429 511 IPR044822 -
Gma10g00616 548 Pfam Myb/SANT-like DNA-binding domain 128 214 IPR044822 -
Gma10g00616 548 PANTHER - 28 535 - -
Gma10g00616 548 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 28 535 - -
Gma10g00616 548 ProSiteProfiles Myb-like domain profile. 430 488 IPR001005 -
Gma10g00616 548 MobiDBLite consensus disorder prediction 277 296 - -
Gma10g00616 548 CDD GT1 431 495 - -
Gma10g00616 548 Coils Coil 319 346 - -
Gma10g00616 548 MobiDBLite consensus disorder prediction 21 64 - -
Gma10g00616 548 ProSiteProfiles Myb-like domain profile. 127 186 IPR001005 -
Gma10g00616 548 Gene3D - 431 492 - -
Gma10g00616 548 Gene3D - 129 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00616 Gma-Chr10 6582442 6585520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00616 9 536 Trihelix Transcription Factor Family AT5G03680 43.502 1.38e-121 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma10g00616 Myb_DNA-bind_4 5.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00616 - - gmx:100799670 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00616 10 6582442 6585520 Gma10g00616 10 6582442 6585520 ECH
Gma10g00616 10 6582442 6585520 Gma02g01922 02 44520114 44520924 GST
Gma19g01812 19 47365384 47367857 Gma10g00616 10 6582442 6585520 PCT
Gma03g01764 03 43721794 43724328 Gma10g00616 10 6582442 6585520 PCT
Gma10g00616 10 6582442 6585520 Gma19g01812 19 47365384 47367857 PCT
Gma10g00616 10 6582442 6585520 Gma03g01764 03 43721794 43724328 PCT