Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00613 ATGGTTCTCAAAACCGAACTATGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGAAGGACATTGCTCAAGAAGCTGTGAAGAAAAGAAGACGTGCTGCCAAAAAGCCTTACTCCAGGTCCATTGTCGGTGCCACTTTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAAATAGGGAAGCTGCCCTTCGTGAAATTAAGGAGAGGAACAAGAAAACAAAGGATGAGAAGAAGGCTAAGAAAGCAGAGTTTGCCAAGTCCCAAAAATCACAAGGGAAAGGAAATGTTTCGAAGGGTGCCATGCCCAAAGGTCCCAAACTTGGTGGTGGAGGCGGGAAACGCTGA 492 0.4614 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDANREAALREIKERNKKTKDEKKAKKAEFAKSQKSQGKGNVSKGAMPKGPKLGGGGGKR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00613 163 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Gma10g00613 163 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Gma10g00613 163 Gene3D - 69 138 - -
Gma10g00613 163 PANTHER 60S RIBOSOMAL PROTEIN L24 1 163 - -
Gma10g00613 163 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Gma10g00613 163 Coils Coil 112 132 - -
Gma10g00613 163 PANTHER 60S RIBOSOMAL PROTEIN L24 1 163 IPR000988 -
Gma10g00613 163 SMART 4TRASH 8 46 IPR011017 -
Gma10g00613 163 MobiDBLite consensus disorder prediction 96 163 - -
Gma10g00613 163 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Gma10g00613 163 MobiDBLite consensus disorder prediction 96 136 - -
Gma10g00613 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00613 Gma-Chr10 6544921 6547027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00613 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.713 4.18e-85 245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01792 19 47157476 47159521 Gma10g00613 10 6544921 6547027 PCT
Gma03g01740 03 43493695 43498687 Gma10g00613 10 6544921 6547027 PCT
Gma10g00613 10 6544921 6547027 Gma19g01792 19 47157476 47159521 PCT
Gma10g00613 10 6544921 6547027 Gma03g01740 03 43493695 43498687 PCT