Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00609 ATGAACCCCAACGATGGCAACAACTCTCCCAGTCCCAAGCCCTTGGAGATGGTCAACCCGGTTCCTCCGTTTCTTTCTAAGACCTTCGACCTCGTCGACGCCCCGACTCTCGACCCGATCATCTCGTGGAACTCCACGGGCCTCAGCTTCGTCGTGTGGGACCCTCTCGAGTTCGCGAGAATTGTCCTTCCTCGACATTTCAAGCACAACAACTTTTCCAGCTTCGTTCGCCAGCTCAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAACGAAGCTTTCCAGCGAGGGAAGAAGCACTTGCTGAAGAACATCCAAAGGCGCAGGTCATCTCAATCCCAGCCGGTTGGTAGCTATATTGGAATCGGATCTTCTACCGAGGCAGGGGGGTCAGAGGTTGAGATTGAGATAGAAAGGCTTAGGAAAGAAAAGACTATGCTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACAGCTCACCACGCAGGAGAAGTGAATCTAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCCTTGCCAAGTTGATCCAAAACCCCGCCTTTTTAGCCCGCCTTAGACATAAGAAGGAGCAAAAGGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAACAGCACCATGAAACTGGAACAACAACAACAGCAGAAACTCTCCAAGAAGGGCAGATAGTGAGGTATCAACCTGATTGGAGAAATATAGCCATGTCTTCTGAAACTCCAAAACTAAGTTCAGTTTCCATTGAACAATCTCCTCACTACCTTTCACAGGGTTTGGCAGGAGAAATGAGTGTAGTAGGTGCAGAAGACCTTACTGCTCAAATTGACAATATTGTATCAGATGATTTGGCTGCAGTGCACGGGATTACGCCGTCTCAAGAAATGATGATTGGAGAAGGATCATCTACCTTTGGAGCTGAAGACCCCCTCTTCAAAGGGAAGAGTGTCATGAGTCCAATTCTAGAAGTTCCTCCAGAGTATTTTCCTTCCTTCCCAGAGGGTTTGACCAAGGAGAAGAAAGACTTTCAAGATTTTTCTGCTCTTGGAACTGAAGGCATGATAAAGCTAGAAGATATATGGGACTCTGGCCTCAATGTTAGTGGTGCTGCTTTAAGCAGTGGGAATGAGCTGTGGGGCAATCATGTCAACTATGAAGAGTTTCCACAATTTGGAGTCACAAGTGGTATGTCTGACTCAGATATCTGGGATATTGGCTTAGGAAGTTTTGGAATTGATACGTGGCCAACTGATGAACCTTCTCTTGGTGAAACAGATGGTCAATCTGGTCAGCCAAATGAAGATAGGTCTAAGAATTTTGATCCATAG 1383 0.4606 MNPNDGNNSPSPKPLEMVNPVPPFLSKTFDLVDAPTLDPIISWNSTGLSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSSQSQPVGSYIGIGSSTEAGGSEVEIEIERLRKEKTMLMEEVVDLQQEQRRTAHHAGEVNLRLQSAEQRQKQMVSFLAKLIQNPAFLARLRHKKEQKEIDSPRVVRKFVKQHHETGTTTTAETLQEGQIVRYQPDWRNIAMSSETPKLSSVSIEQSPHYLSQGLAGEMSVVGAEDLTAQIDNIVSDDLAAVHGITPSQEMMIGEGSSTFGAEDPLFKGKSVMSPILEVPPEYFPSFPEGLTKEKKDFQDFSALGTEGMIKLEDIWDSGLNVSGAALSSGNELWGNHVNYEEFPQFGVTSGMSDSDIWDIGLGSFGIDTWPTDEPSLGETDGQSGQPNEDRSKNFDP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00609 460 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00609 460 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Gma10g00609 460 Coils Coil 135 162 - -
Gma10g00609 460 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00609 460 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 452 IPR027725 -
Gma10g00609 460 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00609 460 Gene3D - 17 114 IPR036388 -
Gma10g00609 460 MobiDBLite consensus disorder prediction 432 460 - -
Gma10g00609 460 MobiDBLite consensus disorder prediction 439 453 - -
Gma10g00609 460 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 16 452 - -
Gma10g00609 460 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00609 460 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00609 460 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00609 Gma-Chr10 6484579 6488134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00609 9 435 HSF AT5G03720 42.568 1.90e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma10g00609 HSF_DNA-bind 3.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00609 K09419 - gmx:100807323 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00609 10 6484579 6488134 Gma10g00609 10 6484579 6488134 ECH
Gma10g00609 10 6484579 6488134 Gma13g01300 13 27476815 27479913 GST