Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00602 ATGGAATCAGCAGCAACAGCATTGAACAACATCATCAACAACAACAACACTGTTCCTGCAGTGTCGCCACCACCACCACCACCACCATCCTCAGAGCCTCAGCCAATGAACATGAATGTCAACATGAACATGAACGTGGTCAACACCACAGAAGGAACAACACCAACACCAAccccaacaacaatggttcccccaacaacaatggttGTTCCTGCAGTGCCAGCTCCAACAACGACAACATTAGCAGTAGCAACAACAACACCAGGGAGTTTGGATTTGTTTGGGAAGAAGAAGAGAGGGAGGCCTAGAAAGTATGATGCAGATGGGAACCTGAGAGTGAGTGCAAGACCAACACCAACACCACCATCGGGTTTTACTTTGTCCACACCTTCTGAGTACTCTTCTTCCAAAAGAGAGCGCGGCAAACACTACAACACAACTTTTGCCAACAACAGCTACCAACAACAACTCTATTCTTCTTCTTTGGGTGATGTGTTTGCAATCACAGCTGCTGGTGATTTTGTAGCGCATGTGTTGAATGCTTATACTGGAGAGGATGTTGCTGGAAAGATCTTGTCATTTGCCCAGAAGGGTCCAAGAGGAATATGCATTCTCTCTGCCAATGGAGCTATCTCGAATGTCACCATACGCCAACCTGGTTCTTCTGGTGGCATTTTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACAGTTGTTGACAACAGTGGCATGAAAAGCCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTCATAGGTGGTGGTGTTGCTGGACTTTTAACTGCTGCTGGCCCCATTCAGATTGTTGTAGGAAGCTTCATGCAAAATTGTTGCAAGACCCAAAAGAGGAAGTATCAACGTGAACAACAGATAGTGGCGGCCACCCCTACTTCAGCTGGTCCAGAAATAGTGACAGCAGCAATACCTATCTCACAAGCAAATGCTGCTGATGGTGAGAACTTTCTGATACCTATACCTATCTATCAGATTCCAGACCAAAACCAGAGAGAATCTATCAGTGTTTCAAGTGACAAACAGAACCTAGATGCTACTCCTGATGCTGCTGCTACTTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACTTCTCCAGACATCAACATATCTTTGCCAGATGAATAG 1191 0.445 MESAATALNNIINNNNTVPAVSPPPPPPPSSEPQPMNMNVNMNMNVVNTTEGTTPTPTPTTMVPPTTMVVPAVPAPTTTTLAVATTTPGSLDLFGKKKRGRPRKYDADGNLRVSARPTPTPPSGFTLSTPSEYSSSKRERGKHYNTTFANNSYQQQLYSSSLGDVFAITAAGDFVAHVLNAYTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVVDNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQNCCKTQKRKYQREQQIVAATPTSAGPEIVTAAIPISQANAADGENFLIPIPIYQIPDQNQRESISVSSDKQNLDATPDAAATWNGSEEYSDQRTSPDINISLPDE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00602 396 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 12 395 - -
Gma10g00602 396 SUPERFAMILY AF0104/ALDC/Ptd012-like 175 294 - -
Gma10g00602 396 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 12 395 IPR039605 GO:0003680
Gma10g00602 396 Pfam Plants and Prokaryotes Conserved (PCC) domain 177 290 IPR005175 -
Gma10g00602 396 MobiDBLite consensus disorder prediction 352 396 - -
Gma10g00602 396 MobiDBLite consensus disorder prediction 92 138 - -
Gma10g00602 396 Gene3D - 176 309 - -
Gma10g00602 396 ProSiteProfiles PPC domain profile profile. 171 313 IPR005175 -
Gma10g00602 396 MobiDBLite consensus disorder prediction 1 18 - -
Gma10g00602 396 MobiDBLite consensus disorder prediction 1 36 - -
Gma10g00602 396 MobiDBLite consensus disorder prediction 94 110 - -
Gma10g00602 396 MobiDBLite consensus disorder prediction 19 34 - -
Gma10g00602 396 MobiDBLite consensus disorder prediction 352 390 - -
Gma10g00602 396 CDD DUF296 177 289 IPR005175 -
Gma10g00602 396 MobiDBLite consensus disorder prediction 116 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00602 Gma-Chr10 6356141 6360757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00602 96 363 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.715 4.62e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00602 - - gmx:100812673 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00602 10 6356141 6360757 Gma10g00602 10 6356141 6360757 ECH
Gma10g00602 10 6356141 6360757 Gma13g01294 13 27345603 27349480 GST