Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00582 ATGGCGGTTCCCGCGACGGTCGCCGCCGTTCCGGCATCGCTTTACGTCGGAGACCTCCACTCTGAAGTCGTAGACCACCACCTCTTCGAGGCTTTCGCGGAGTTCAAGACCATGGATTCCGTTCGCGTCTGCAGAGACCGCGTCACAATGAAATCGCTCTGTTACGGTTACGTCAACTTCAAGtctcagcaagatgCAATTCGTGCAATGAAGTTGAAAAACAATTCTTATCTGAATGGAAAAGTGATAAGGGTCATGTGGTCACATCCTGATCCTAGTGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGaacttagctggatccatagataatgcggggttgcatgatttatttcaaaaatatgggaatattttgtccagcaaagttgtcatgTCTGGGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTACTGTGGGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCTATGATGCCAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGTTATATCAAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTAAAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCGTCAATTTGAGGAGAAACGTAAGGAACAAATATTGAAATATCAGGCATCTAACTTGTATGTGAAGAACATTGATGACGATGTTACCGATAAAGAACTGCGAGATCTGTTTAGTTCATGTGGCACTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCAGAGGAAGCTAATAAAGCTGTGAGGTCTTTTAATGGATGCATGTTCCACCGTAAACCATTGTATATTGCTATTGCTCAGAGGAAAATGGACAGGAAAACACAGTTGAATCTCCATTATGCACCGCAACAAACAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGATTTCCACCTTACTTCTATCATAGTGTTGCTTCACAGATGTTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTCTGTGCCTCCCACTAGATCATTTCAACAATCACAGGTTCCTAACTTTACTAGGCATCATAGGCAAAACAGGAGCAGGATGAATGGGAATGTGAATTCACTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAATACTATCAGGCAGTCGAGTACTTGGCAGTCTAG 1470 0.4014 MAVPATVAAVPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYFYHSVASQMFQSGLLYQPLGLRSGWRANDSVPPTRSFQQSQVPNFTRHHRQNRSRMNGNVNSLGKAHSGVYIPQYYQAVEYLAV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00582 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gma10g00582 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Gma10g00582 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Gma10g00582 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gma10g00582 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Gma10g00582 489 CDD RRM4_I_PABPs 294 371 - -
Gma10g00582 489 PANTHER POLYADENYLATE-BINDING PROTEIN 5 483 - -
Gma10g00582 489 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Gma10g00582 489 Gene3D - 101 181 IPR012677 -
Gma10g00582 489 Coils Coil 263 283 - -
Gma10g00582 489 MobiDBLite consensus disorder prediction 435 452 - -
Gma10g00582 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gma10g00582 489 PANTHER RNA BINDING PROTEIN 5 483 - -
Gma10g00582 489 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gma10g00582 489 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gma10g00582 489 SMART rrm2_1 13 86 IPR003954 GO:0003676
Gma10g00582 489 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gma10g00582 489 MobiDBLite consensus disorder prediction 435 462 - -
Gma10g00582 489 Gene3D - 277 380 IPR012677 -
Gma10g00582 489 Gene3D - 184 276 IPR012677 -
Gma10g00582 489 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 466 IPR006515 GO:0003723
Gma10g00582 489 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gma10g00582 489 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gma10g00582 489 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gma10g00582 489 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gma10g00582 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gma10g00582 489 SUPERFAMILY RNA-binding domain, RBD 292 382 IPR035979 GO:0003676
Gma10g00582 489 CDD RRM2_I_PABPs 98 174 IPR045305 -
Gma10g00582 489 SUPERFAMILY RNA-binding domain, RBD 184 277 IPR035979 GO:0003676
Gma10g00582 489 CDD RRM1_I_PABPs 13 92 - -
Gma10g00582 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gma10g00582 489 Gene3D - 5 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00582 Gma-Chr10 6111759 6116133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00582 10 489 Eukaryotic Initiation Factors Gene Family AT2G36660 53.608 1.62e-176 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00582 K13126 - gmx:100798828 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00582 10 6111759 6116133 Gma10g00582 10 6111759 6116133 ECH
Gma10g00582 10 6111759 6116133 Gma13g01275 13 27113165 27116240 GST
Gma19g01782 19 47079358 47092238 Gma10g00582 10 6111759 6116133 PCT
Gma03g01732 03 43431304 43435524 Gma10g00582 10 6111759 6116133 PCT
Gma10g00582 10 6111759 6116133 Gma19g01782 19 47079358 47092238 PCT
Gma10g00582 10 6111759 6116133 Gma03g01732 03 43431304 43435524 PCT