Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00544 ATGGCAGTTCCAGGGAGGCGCAACGGCATGAACGACGACGAAGAGGAATTAGACGACAACGCCCTTTTCGAAGAACAAGGTGCCGTCGAAGACGACGCCGATACCCCTCCTCACCTCCGCGACCTCTCCGCCGCCGCTCAGCTAGGCGACGTCCACGCCCTCCGTATCGCTCTTGataacttgactggtaGTATTGATGAGCCAGTGGAGGATGGGGATACTGCTCTTCATTTGACATGTCTATATGGCCATTTGGCTTGTGTCCAGCTGCTACTAGAAAGAGGGGCGAACATTGAGGCTAATGATGAAGATGGTGCTATTCCTTTGCACGATGCTTGTGCAGGAGGATTTACTGAGATTGTCCAACTGCTGCTTAGCAGAGCTAATGATGCTGAACATATAAAGAGAATGCTAGAATCAGTTGATTCTGAGGGTGATACCCCTCTCCATCACGCTGCTAGAGGTGAGCATGTTGAAGTAATTAGGTTGTTGCTGTCTAATGGTGCATCTCCCACAAAGGCTAACTTATACGGAAAGGCCCCTGCAGATTTGCCTGAACAGGAAGCTGCTCGGAGGCTGCTTGAAGCTGCAGCTCTTGCCATGGCATGCCAATAG 615 0.5024 MAVPGRRNGMNDDEEELDDNALFEEQGAVEDDADTPPHLRDLSAAAQLGDVHALRIALDNLTGSIDEPVEDGDTALHLTCLYGHLACVQLLLERGANIEANDEDGAIPLHDACAGGFTEIVQLLLSRANDAEHIKRMLESVDSEGDTPLHHAARGEHVEVIRLLLSNGASPTKANLYGKAPADLPEQEAARRLLEAAALAMACQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00544 204 SUPERFAMILY Ankyrin repeat 42 184 IPR036770 -
Gma10g00544 204 Pfam Ankyrin repeats (3 copies) 101 173 IPR002110 GO:0005515
Gma10g00544 204 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Gma10g00544 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Gma10g00544 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Gma10g00544 204 SMART ANK_2a 104 133 IPR002110 GO:0005515
Gma10g00544 204 SMART ANK_2a 71 100 IPR002110 GO:0005515
Gma10g00544 204 SMART ANK_2a 144 173 IPR002110 GO:0005515
Gma10g00544 204 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Gma10g00544 204 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Gma10g00544 204 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Gma10g00544 204 Gene3D - 11 134 IPR036770 -
Gma10g00544 204 ProSiteProfiles Ankyrin repeat region circular profile. 104 130 - -
Gma10g00544 204 Pfam Ankyrin repeat 71 99 IPR002110 GO:0005515
Gma10g00544 204 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Gma10g00544 204 Gene3D - 135 202 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00544 Gma-Chr10 5596601 5599045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00544 66 188 Ion Channels AT2G26650 29.932 4.88e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00544 - - gmx:100804303 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00544 10 5596601 5599045 Gma10g00544 10 5596601 5599045 ECH
Gma10g00544 10 5596601 5599045 Gma20g01838 20 45742132 45754632 GST
Gma10g00544 10 5596601 5599045 Gma13g01256 13 26869813 26872457 GST