Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00543 ATGCAAGTCCAAGAGGAATTACTTGTGGTTTCCAAGGATCACACCCAAATGATGATGATCAAGGGCAAAAGAACCAAGCGTCAAAGAGCACCATCCCCTCTTAGGCTAGCCATGCCTTATAATTCAACCTCAAGTAATAGTAGCACCAACAATTCCATTGATAGTGCCACAACCTCCTTACCCTCTCCCTCTCCCACCAACAACACAATTGAATTTCGAGAAGACCAAGACATGGCGAATTGTCTCATCCTTCTCGCTCAAGGCAGATACCACGTGGCAGCACCAACGCCGCATCACAACAATAACAACAACGACGACGACAACCTCAAAAAGTCAACAAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGAGGACACAGAGCAAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCATCAGAAGCAGTTACTAATTTCATTGAAGAGAATAATGATCGTTATGACCCCACCACAAGTACCACCCTCTCTTTGAAAACACCAAATGGTGTTAGTAATTTGTGTGGCACCATCACTGCCACAACAACAACAACAACAACAAAAGCTAATAAGGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCATCAGGGCAAGCCTTGGGGGGCCACATGAGGCGTCATAGAACTCTTGTGAATGCTTCTATGACAACTTCTATGAGGGGTGGAAATGTTGTTGGTAGCAATGAATTTCAAGAAGCGAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACTACCAGAGGATGATCATCATAGAGAATCCAAGTTTTCGTTTCAACAAAGAGAAAAAAACGTTATTGTCTTCTCTAAGTCTTCTTTGGTGGATTGCCATTACTGA 894 0.4362 MQVQEELLVVSKDHTQMMMIKGKRTKRQRAPSPLRLAMPYNSTSSNSSTNNSIDSATTSLPSPSPTNNTIEFREDQDMANCLILLAQGRYHVAAPTPHHNNNNNDDDNLKKSTSLYLYQCKTCNRCFPSFQALGGHRASHKKPKQNGTFSSEAVTNFIEENNDRYDPTTSTTLSLKTPNGVSNLCGTITATTTTTTTKANKVHECSICGAEFSSGQALGGHMRRHRTLVNASMTTSMRGGNVVGSNEFQEAKKPLKLDLNLPALPEDDHHRESKFSFQQREKNVIVFSKSSLVDCHY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00543 297 Gene3D Classic Zinc Finger 115 225 - -
Gma10g00543 297 SUPERFAMILY beta-beta-alpha zinc fingers 117 225 IPR036236 -
Gma10g00543 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Gma10g00543 297 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Gma10g00543 297 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Gma10g00543 297 SMART c2h2final6 118 140 IPR013087 -
Gma10g00543 297 SMART c2h2final6 203 225 IPR013087 -
Gma10g00543 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 225 IPR013087 -
Gma10g00543 297 Pfam C2H2-type zinc finger 202 226 - -
Gma10g00543 297 Pfam C2H2-type zinc finger 118 143 - -
Gma10g00543 297 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 14 296 - -
Gma10g00543 297 PANTHER ZINC FINGER PROTEIN ZAT5 14 296 - -
Gma10g00543 297 MobiDBLite consensus disorder prediction 37 70 - -
Gma10g00543 297 MobiDBLite consensus disorder prediction 21 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00543 Gma-Chr10 5590845 5592009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00543 10 297 C2H2 Transcription Factor Family AT2G28200 41.748 1.51e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00543 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00543 - - gmx:100785596 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00543 10 5590845 5592009 Gma03g01708 03 43256452 43257512 ECH
Gma10g00543 10 5590845 5592009 Gma10g00543 10 5590845 5592009 ECH
Gma10g00543 10 5590845 5592009 Gma11g01579 11 16967680 16969026 ECH
Gma10g00543 10 5590845 5592009 Gma12g00726 12 6532347 6533294 ECH
Gma10g00543 10 5590845 5592009 Gma13g02863 13 43134543 43135859 ECH
Gma10g00543 10 5590845 5592009 Gma12g01686 12 37304460 37305861 ECH
Gma10g00543 10 5590845 5592009 Gma20g01805 20 45444901 45446317 GST
Gma10g00543 10 5590845 5592009 Gma13g01255 13 26863900 26864766 GST
Gma19g01758 19 46895445 46896305 Gma10g00543 10 5590845 5592009 PCT
Gma03g01708 03 43256452 43257512 Gma10g00543 10 5590845 5592009 PCT
Gma10g00543 10 5590845 5592009 Gma19g01758 19 46895445 46896305 PCT
Gma10g00543 10 5590845 5592009 Gma03g01708 03 43256452 43257512 PCT