Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00537 ATGAGACTGTGGATAGTTTTTCCCAGTAACATGATGATTAAGCTGTCTCAGGAGCTAATTTTTAATAGCTATAAGGCCATTGATGGGCGTGGAGCTGATGTGCACATTGTGGGTGGAAGCTGCATTACTCTTCAGTATATTAGCAATGTCATCATTCACAACATTCACATCCACCATTGCCATCCCTCGGGCAACGCTAACGTGCGTTGGCGCCCAGAGCACTACGGGTACCGCACGGAGTCCGACGGCGACGGAATCTCGATCTTGGGCTCGCGGGACATCTGA 285 0.4982 MRLWIVFPSNMMIKLSQELIFNSYKAIDGRGADVHIVGGSCITLQYISNVIIHNIHIHHCHPSGNANVRWRPEHYGYRTESDGDGISILGSRDI 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00537 94 PANTHER PECTATE LYASE 18-RELATED 2 94 IPR045032 GO:0030570
Gma10g00537 94 SUPERFAMILY Pectin lyase-like 3 94 IPR011050 -
Gma10g00537 94 Coils Coil 94 94 - -
Gma10g00537 94 Gene3D - 1 94 IPR012334 -
Gma10g00537 94 PANTHER PECTATE LYASE 2 94 - -
Gma10g00537 94 PRINTS Pollen allergen Amb family signature 18 34 IPR018082 -
Gma10g00537 94 PRINTS Pollen allergen Amb family signature 82 94 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00537 Gma-Chr10 5540548 5543485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00537 3 94 Polysaccharide Lyase AT3G53190 81.522 5.04e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00537 K01728 - gmx:100815062 173.326