Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00536 ATGCAAGGAGAACATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAACAATTGACTAGCTTTGTGACCCGTCTTGGGGAGAGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTCAAGAGAAGTGGTAAAAGCTGCAGGTTAAGATGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCATTTTAGTGTCGAAGAAGAGCAGCTTATTGTTCAGCTTCAACAACAATTGGGGAATAAGTGGGCAAAGATTGCTCGGAAACTTCCAGGTAGAACTGACAATGAAATCAAGAATTTCTGGAGAACTCATTTAAGAAATAGAGCTCAAGCTCAACAAGTCCCGGGAGATTTTAAGTACAAATTAGAAATTGCAACAGAAGAAGTCAACCAGAAAAGCATTGACATGGATTCCAAGGATTACAAACATGGAAACGTTTGCTGTCAAGATAGTGAGTGGGAGACAAAGGATGGTAGCTCCATAGACACTTTACCCTTATCAGATTGGGAATTGGGAAGCTCACCCTATGAAACTAGGATATTGGATTGGATAGCAGAATTGCAAAATGGATATGGTGATAAAGAACTAGAACAAGATTGTAATAGCACAGGAACGTGCAACAACTATAGTCCTCAAGAATTTGATGAGGGATGTGACTCATGGGATTATTCAGGTTCTTTGTGGGATATGAACTAA 699 0.4106 MQGEHLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLKRSGKSCRLRWMNYLRPNLKHGHFSVEEEQLIVQLQQQLGNKWAKIARKLPGRTDNEIKNFWRTHLRNRAQAQQVPGDFKYKLEIATEEVNQKSIDMDSKDYKHGNVCCQDSEWETKDGSSIDTLPLSDWELGSSPYETRILDWIAELQNGYGDKELEQDCNSTGTCNNYSPQEFDEGCDSWDYSGSLWDMN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00536 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gma10g00536 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 232 - -
Gma10g00536 232 Gene3D - 63 107 - -
Gma10g00536 232 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gma10g00536 232 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gma10g00536 232 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Gma10g00536 232 CDD SANT 81 106 IPR001005 -
Gma10g00536 232 PANTHER MYB TRANSCRIPTION FACTOR 3 232 - -
Gma10g00536 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Gma10g00536 232 CDD SANT 10 55 IPR001005 -
Gma10g00536 232 Gene3D - 8 60 - -
Gma10g00536 232 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gma10g00536 232 SMART sant 60 108 IPR001005 -
Gma10g00536 232 SMART sant 7 57 IPR001005 -
Gma10g00536 232 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00536 Gma-Chr10 5532428 5534114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00536 4 116 MYB Transcription Factor Family AT5G59780 59.292 3.60e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00536 Myb_DNA-binding 9.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00536 K09422 - gmx:100783472 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00536 10 5532428 5534114 Gma10g00536 10 5532428 5534114 ECH