Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00531 ATGTCTACCTCCGCAGCTTCCCTCGCACTCCCAACCCTCACTCTCCGAACCCGACAACCTCTATGTTCTCCCCAATGCTTCTCCTCGTCCCTCTCCCTCACACCCAACAACAAACCCATTTCCATTTCTGCTGTTTTTCTCAAACCAACAACTCTGTCGTCGTCTCGCTTCGTTCCCCACGTCGTGGTGTCGTCGGATTTGGGGCAGGAGGAGGACACCTTCAGTGACGGAGACGGCCCCAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGGAATCTTCCGTTCAACGTCGACAGCGCGCAGCTCGCGGAGCTCTTTGAGAGTGCCGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACTACTGGGAGGAGCAGGGGGTTTGGGTTTGTCACCATGTCTTCGGTTGAGGAAGCTGAAGCGGCTGCTCAGCAGTTCAATGGCTATGAACTTGATGGAAGAGCATTGAGAGTGAATTCTGGGCCACCTCCTGCTCGGAATGAGAGTGCTCCTCGTTTTAGAGGTGGTTCTTCTTTCGGTTCCAGAGGTGGTGGTCCTTCAGATAGTGAAAACCGTGTTCATGTAAGTAATCTTGCTTGGGGTGTTGACAATGTAGCACTTAAGTCATTGTTTCGTGAACAAGGGAATGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTTCAGTAGCCCTGATGAGGTCAACAGTGCAATTCAGTCCTTAAATGGCGTGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCCAAGCCCAAGCAGTTCTGA 828 0.5109 MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLTPNNKPISISAVFLKPTTLSSSRFVPHVVVSSDLGQEEDTFSDGDGPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRVSLADSKPKQF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00531 275 Gene3D - 68 188 IPR012677 -
Gma10g00531 275 Gene3D - 189 274 IPR012677 -
Gma10g00531 275 MobiDBLite consensus disorder prediction 155 191 - -
Gma10g00531 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Gma10g00531 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Gma10g00531 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Gma10g00531 275 SMART rrm1_1 193 266 IPR000504 GO:0003723
Gma10g00531 275 SMART rrm1_1 87 160 IPR000504 GO:0003723
Gma10g00531 275 SUPERFAMILY RNA-binding domain, RBD 82 189 IPR035979 GO:0003676
Gma10g00531 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Gma10g00531 275 PANTHER OS02G0815200 PROTEIN 1 275 - -
Gma10g00531 275 CDD RRM_HP0827_like 87 160 - -
Gma10g00531 275 SUPERFAMILY RNA-binding domain, RBD 189 273 IPR035979 GO:0003676
Gma10g00531 275 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00531 Gma-Chr10 5471520 5474223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00531 170 272 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 3.75e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00531 - - gmx:100786275 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00531 10 5471520 5474223 Gma13g01244 13 26753932 26756400 GST
Gma19g01665 19 46015994 46020432 Gma10g00531 10 5471520 5474223 PCT
Gma03g01620 03 42381302 42385225 Gma10g00531 10 5471520 5474223 PCT