Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00501 ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAGAGAGTACATAGAGAAACATGGAACTGGAGGGAACTGGATTGCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAGAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCAAACCTTAAGCATGGGGAGTTTTCTGAAGGTGAAGATAGAATAATCTGCACTCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAAAAAAATGATGGGAGTGAAAATGAACCCTTCAGCACTGAAGAAACCTCACCAAGTTAACCTTTCATCCATGCTTCAAAACTCAACACCATCATCACCCTTCACCTCATTATCCTTCAAAAACAACCACAACAACTCTTACTACTACCAACCCCATTTGCCCTTTACAGGCTCCGAGTCCATGACATATTCAAGTCTTCTCAGTGACAATTATTCCACTTTTGAGAGCCTTCAGAATTACCAAGTTAATAATAGTGGCTTTATGTTAGGATGTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGTTGCAACAACAATCAGATCAATCATGTCAAGGAAGCAGAACTTGGATTTATTGGTGATGGAACCTTTTGTGACCAGATAATAGGTGGTGGTTTTAGTTACCTCAATAGTGGGGTGGAACTGGAAGATACTCAAAAGTTGGTGCCCTCCAATGCTGGTAAGGTTAATAGTGGGGTGACAGATGAAGAAAGTAGATTATGGGGAGAAAGTCCATTAGAGTATGGTCTAGAAGAAATTAAACAGCTAATTAGCACTAGTAGTTGCAACAACTTTATGCTTGATGACAGCAAGACAGGGGAAATGGCCATGTACTACTGA 963 0.4102 MGRAPCCDKANVKKGPWSPEEDEKLREYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEGEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGVKMNPSALKKPHQVNLSSMLQNSTPSSPFTSLSFKNNHNNSYYYQPHLPFTGSESMTYSSLLSDNYSTFESLQNYQVNNSGFMLGCETSCSSSSDGSCNNNQINHVKEAELGFIGDGTFCDQIIGGGFSYLNSGVELEDTQKLVPSNAGKVNSGVTDEESRLWGESPLEYGLEEIKQLISTSSCNNFMLDDSKTGEMAMYY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00501 320 SMART sant 13 64 IPR001005 -
Gma10g00501 320 SMART sant 67 115 IPR001005 -
Gma10g00501 320 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma10g00501 320 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma10g00501 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gma10g00501 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma10g00501 320 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma10g00501 320 CDD SANT 16 62 IPR001005 -
Gma10g00501 320 Gene3D - 7 68 - -
Gma10g00501 320 PANTHER OS09G0431300 PROTEIN 1 305 - -
Gma10g00501 320 Gene3D - 69 137 - -
Gma10g00501 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gma10g00501 320 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma10g00501 320 PANTHER TRANSCRIPTION FACTOR RAX3 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00501 Gma-Chr10 5019118 5021595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00501 1 119 MYB Transcription Factor Family AT5G57620 86.555 1.02e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00501 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00501 K09422 - gmx:100820139 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01741 19 46729325 46730863 Gma10g00501 10 5019118 5021595 PCT
Gma03g01688 03 43071282 43073507 Gma10g00501 10 5019118 5021595 PCT
Gma10g00501 10 5019118 5021595 Gma19g01741 19 46729325 46730863 PCT
Gma10g00501 10 5019118 5021595 Gma03g01688 03 43071282 43073507 PCT